View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2330_low_7 (Length: 337)
Name: NF2330_low_7
Description: NF2330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2330_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 8285123 - 8284805
Alignment:
| Q |
1 |
accaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaatt |
100 |
Q |
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| T |
8285123 |
accaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaatt |
8285024 |
T |
|
| Q |
101 |
ccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaagggttgaaccattgaggagtttccatttt |
200 |
Q |
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| T |
8285023 |
ccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaagggttgaaccattgaggagtttccatttt |
8284924 |
T |
|
| Q |
201 |
cacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactacttcattaatatgattctccacagggaaaga |
300 |
Q |
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| T |
8284923 |
cacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactacttcattaatatgattctgcacagggaaaga |
8284824 |
T |
|
| Q |
301 |
gaaaaatgggggtgtaggt |
319 |
Q |
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||||||||||||||||||| |
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| T |
8284823 |
gaaaaatgggggtgtaggt |
8284805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34687223 - 34687150
Alignment:
| Q |
1 |
accaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgat |
74 |
Q |
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| T |
34687223 |
accaaaattaaattgtgggtcttgttggtgcatgtgcatcatattcatcgcttcctcttgaatattctcttgat |
34687150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 34695149 - 34694979
Alignment:
| Q |
1 |
accaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaatt |
100 |
Q |
| |
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|||||||||||||||||||||||| || | ||| || ||||||| || | ||||||||||| |||||||||||| | ||| ||| |||||| ||| |
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| T |
34695149 |
accaaaattaagttgtgggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagatt |
34695050 |
T |
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| Q |
101 |
ccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaa |
171 |
Q |
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| T |
34695049 |
ccatttttgtttccatagttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaa |
34694979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 34687001 - 34686929
Alignment:
| Q |
250 |
tgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggt |
319 |
Q |
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| T |
34687001 |
tgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggt |
34686929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 34694959 - 34694855
Alignment:
| Q |
218 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtg |
314 |
Q |
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|||||||| |||| |||||||| | ||| | | ||||| ||||| ||||||| || ||||||||||||||| || ||||||||| |||||||||||| |
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| T |
34694959 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
34694860 |
T |
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| Q |
315 |
taggt |
319 |
Q |
| |
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||||| |
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|
| T |
34694859 |
taggt |
34694855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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