View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2330_low_9 (Length: 302)

Name: NF2330_low_9
Description: NF2330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2330_low_9
NF2330_low_9
[»] chr8 (3 HSPs)
chr8 (2-288)||(42473149-42473435)
chr8 (61-121)||(42480607-42480667)
chr8 (119-197)||(33361830-33361908)
[»] scaffold0005 (1 HSPs)
scaffold0005 (119-197)||(40692-40770)
[»] chr5 (1 HSPs)
chr5 (119-197)||(22272137-22272215)
[»] chr4 (1 HSPs)
chr4 (119-197)||(14798957-14799035)
[»] chr3 (2 HSPs)
chr3 (119-197)||(2734821-2734899)
chr3 (119-197)||(40923867-40923945)
[»] chr1 (1 HSPs)
chr1 (119-197)||(27129471-27129549)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 2 - 288
Target Start/End: Complemental strand, 42473435 - 42473149
Alignment:
Q  2 agatgaagaacgtttgacttcctcacccaaacctgaaaactgtctcgagaacccgaaagttgaagaaaatgaaaaacaaccttccaaggttcctagagtt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42473435 agatgaagaacgtttgacttcctcacccaaacctgaaaactgtctcgagaacctgaaagttgaagaaaatgaaaaacaaccttccaaggttcctagagtt 42473336  T
Q  102 gcatatggtgagttggagaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgtaatt 201  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42473335 gcatatggtgagttggggaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgtaatt 42473236  T
Q  202 taacacttcaagatgttgattttagtcgtgatggtgaaactagagaagcaagacaccaagatgcttttctgtcaatggcaaaggttg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42473235 taacacttcaagatgttgattttagtcgtgatggtgaaactagcgaagcaagacaccaagatgcttttctgtcaatggcaaaggttg 42473149  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 42480667 - 42480607
Alignment:
Q  61 ttgaagaaaatgaaaaacaaccttccaaggttcctagagttgcatatggtgagttggagaa 121  Q
    ||||||||||||| || |||| ||||||||||| ||||||||||| || |||||| |||||    
T  42480667 ttgaagaaaatgagaagcaactttccaaggttcgtagagttgcatgtgatgagtttgagaa 42480607  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 33361830 - 33361908
Alignment:
Q  119 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 197  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  33361830 gaatgttattgaagtgcaaagttcgactcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 33361908  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 40692 - 40770
Alignment:
Q  119 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 197  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  40692 gaatgttattgaagtgcaaagttcgattcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 40770  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 22272215 - 22272137
Alignment:
Q  119 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 197  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  22272215 gaatgttattgaagtgcaaagttcgagtcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 22272137  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 14799035 - 14798957
Alignment:
Q  119 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 197  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  14799035 gaatgttattgaagtgcaaagttcgagtcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 14798957  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 2734821 - 2734899
Alignment:
Q  119 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 197  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  2734821 gaatgttattgaagtgcaaagttcgagtcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 2734899  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 40923867 - 40923945
Alignment:
Q  119 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 197  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  40923867 gaatgttattgaagtgcaaagttcgagtcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 40923945  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 27129471 - 27129549
Alignment:
Q  119 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 197  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| ||||||||||| |||| |||||||||||||||    
T  27129471 gaatgttattgaagtgcaaagttcgagtcaaattctgaataatcgaatatgtctcaaggcttcaattgacattgttcgt 27129549  T

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