View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2331R-Insertion-10 (Length: 952)

Name: NF2331R-Insertion-10
Description: NF2331R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2331R-Insertion-10
NF2331R-Insertion-10
[»] chr2 (7 HSPs)
chr2 (49-415)||(39384782-39385148)
chr2 (531-715)||(39384492-39384676)
chr2 (787-937)||(39384270-39384423)
chr2 (58-127)||(39180566-39180635)
chr2 (463-511)||(39384678-39384727)
chr2 (285-340)||(25331915-25331971)
chr2 (293-328)||(17768420-17768455)
[»] chr3 (6 HSPs)
chr3 (512-622)||(6913535-6913645)
chr3 (294-340)||(49283619-49283665)
chr3 (294-415)||(11884909-11885030)
chr3 (285-340)||(32998933-32998989)
chr3 (294-328)||(48676837-48676871)
chr3 (303-336)||(37089324-37089357)
[»] scaffold0187 (4 HSPs)
scaffold0187 (293-401)||(10549-10657)
scaffold0187 (293-401)||(20877-20985)
scaffold0187 (297-401)||(10934-11038)
scaffold0187 (297-401)||(21262-21366)
[»] chr5 (2 HSPs)
chr5 (293-385)||(40600737-40600829)
chr5 (294-355)||(40601391-40601452)
[»] scaffold0220 (1 HSPs)
scaffold0220 (293-355)||(20594-20656)
[»] scaffold0421 (1 HSPs)
scaffold0421 (284-328)||(7287-7332)
[»] chr8 (6 HSPs)
chr8 (294-355)||(37355021-37355082)
chr8 (285-385)||(13544547-13544648)
chr8 (285-385)||(13679825-13679926)
chr8 (293-341)||(39220091-39220139)
chr8 (285-355)||(13545175-13545246)
chr8 (285-355)||(13679227-13679298)
[»] chr4 (3 HSPs)
chr4 (293-328)||(16499122-16499157)
chr4 (293-340)||(35368336-35368383)
chr4 (293-330)||(27749045-27749082)
[»] chr6 (1 HSPs)
chr6 (285-349)||(33771427-33771492)
[»] chr1 (3 HSPs)
chr1 (307-340)||(51488804-51488837)
chr1 (295-340)||(51489136-51489181)
chr1 (296-329)||(51720739-51720772)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 49 - 415
Target Start/End: Complemental strand, 39385148 - 39384782
Alignment:
Q  49 atggaatttagacttctttctccgtgccaaagtctggagctgagtacctcaaagttgaagaacaatcttacaaccaagtnnnnnnnctagcaggaattca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||    
T  39385148 atggaatttagacttctttctccgtgccaaagtctggagctgagtacctcaaagttgaagaacaatcttacaaccaaataaaaaaactagcaggaattca 39385049  T
Q  149 gacttctttgggtgttggatgaaatattttctgaaaatcacttcttcccttcacttggannnnnnnattaaaacaaagtccacattcatatctctcattt 248  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  39385048 gacttctttgggtgttggatggaatattttctgaaaatcacttcttcccttcacttggatttttttattaaaacaaagtccacattcatatctctcattt 39384949  T
Q  249 cattcctatataagtagtcactagtctttcttataaagagaaatctagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatg 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  39384948 cattcctatataagtagtcactagtctttcttataaagagaaatctagggtcatacccactaacactctcttttaacacacctaataaaaatcagcaatg 39384849  T
Q  349 tgtcccannnnnnnaattcaatttacttgtaacctgcgtatcccttttctaaacttttgtatttttt 415  Q
    |||||||       |||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  39384848 tgtcccatttttttaattcaatttacttgtaatctgcgtatcccgtttctaaacttttgtatttttt 39384782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 531 - 715
Target Start/End: Complemental strand, 39384676 - 39384492
Alignment:
Q  531 aactgttaaaattagccataagtgtatgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggaattggaatcataaatcattttaa 630  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39384676 aactgttaaaattagccataagtgtctgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggaattggaatcataattcattttaa 39384577  T
Q  631 gtatttatctttttgctatgacatttttaggataannnnnnnctccataaaatgcataaaaatgagaatattttgaatagtttcc 715  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  39384576 gtatttatctttttgctatgacatttttaggataatttttttctccataaaatgcataaaaatgagaatattttgaatagtttcc 39384492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 787 - 937
Target Start/End: Complemental strand, 39384423 - 39384270
Alignment:
Q  787 aacaattttaagttacttaatgtcaaaattaagctttcgttatcattttataagtggaatgtaaaagttatttacattctaaatcacaggtcactttgac 886  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39384423 aacaattttaagttacttattgtcaaaattaagctttcgttatcattttataagtggaatgtaaaagttatttacattctaaatcacaggtcactttgac 39384324  T
Q  887 aatta-aaaatatagttaatcttgtgct-aaaaatttatg-attatttcataaa 937  Q
    ||||| |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  39384323 aattaaaaaatatagttaatcttgtgctaaaaaatttatgaattatttcataaa 39384270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 39180566 - 39180635
Alignment:
Q  58 agacttctttctccgtgccaaagtctggagctgagtacctcaaagttgaagaacaatcttacaaccaagt 127  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  39180566 agacttctttctcagtgccaaagtctggaactgagtacctcaaagttgaagaataatcttacaaccaagt 39180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 39384727 - 39384678
Alignment:
Q  463 tgttgagaaacaacatg-atgagtttagatctgaatcaagtctattaatg 511  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39384727 tgttgagaaacaacatggatgagtttagatctgaatcaagtctattaatg 39384678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 25331915 - 25331971
Alignment:
Q  285 agagaaat-ctagggtcacatccactaacactctcttttaacacatctaataaaaat 340  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||| | |||||||||    
T  25331915 agagaaatgctagggtcacacccactaacactctcttttagcacacccaataaaaat 25331971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 17768420 - 17768455
Alignment:
Q  293 ctagggtcacatccactaacactctcttttaacaca 328  Q
    ||||||| ||||||||||||||||||||||||||||    
T  17768420 ctagggtgacatccactaacactctcttttaacaca 17768455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 512 - 622
Target Start/End: Original strand, 6913535 - 6913645
Alignment:
Q  512 ggaattttcttgcttatataactgttaaaattagccataagtgtatgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggaattg 611  Q
    ||||||| ||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6913535 ggaatttccttacttatataactgttaatattagccatcagtgtctgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggatttg 6913634  T
Q  612 gaatcataaat 622  Q
    |||||||||||    
T  6913635 gaatcataaat 6913645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 49283619 - 49283665
Alignment:
Q  294 tagggtcacatccactaacactctcttttaacacatctaataaaaat 340  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||||    
T  49283619 tagggtcacattcactaacactctcttttaacacacccaataaaaat 49283665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 294 - 415
Target Start/End: Original strand, 11884909 - 11885030
Alignment:
Q  294 tagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgcgtatccct 393  Q
    |||||||||| ||||||||||||| |||||||||  | ||||||||||||  |||||| |||       ||||||||| ||||||||| ||   ||||      
T  11884909 tagggtcacacccactaacactctattttaacacgcccaataaaaatcagtcatgtgttccatttttttaattcaattgacttgtaacatgttcatccta 11885008  T
Q  394 tttctaaacttttgtatttttt 415  Q
    ||||||||| |||| |||||||    
T  11885009 tttctaaacgtttgaatttttt 11885030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 32998933 - 32998989
Alignment:
Q  285 agagaaat-ctagggtcacatccactaacactctcttttaacacatctaataaaaat 340  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||| | |||||||||    
T  32998933 agagaaatgctagggtcacacccactagcactctcttttaacacaccaaataaaaat 32998989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 48676837 - 48676871
Alignment:
Q  294 tagggtcacatccactaacactctcttttaacaca 328  Q
    |||||||||||||||||||| ||||||||||||||    
T  48676837 tagggtcacatccactaacattctcttttaacaca 48676871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 336
Target Start/End: Complemental strand, 37089357 - 37089324
Alignment:
Q  303 atccactaacactctcttttaacacatctaataa 336  Q
    |||||||||||||||||||||||||||| |||||    
T  37089357 atccactaacactctcttttaacacatccaataa 37089324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 293 - 401
Target Start/End: Original strand, 10549 - 10657
Alignment:
Q  293 ctagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgcgtatccc 392  Q
    |||||||||||  ||||||||||||||||||||||| | ||||||||| ||| ||||||||||       ||||||||||||||||||||||| |||||     
T  10549 ctagggtcacactcactaacactctcttttaacacacccaataaaaattagccatgtgtcccatttttttaattcaatttacttgtaacctgcttatcct 10648  T
Q  393 ttttctaaa 401  Q
     ||||||||    
T  10649 gtttctaaa 10657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 293 - 401
Target Start/End: Original strand, 20877 - 20985
Alignment:
Q  293 ctagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgcgtatccc 392  Q
    |||||||||||  ||||||||||||||||||||||| | ||||||||| ||| ||||||||||       ||||||||||||||||||||||| |||||     
T  20877 ctagggtcacactcactaacactctcttttaacacacccaataaaaattagccatgtgtcccatttttttaattcaatttacttgtaacctgcttatcct 20976  T
Q  393 ttttctaaa 401  Q
     ||||||||    
T  20977 gtttctaaa 20985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 297 - 401
Target Start/End: Complemental strand, 11038 - 10934
Alignment:
Q  297 ggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgcgtatccctttt 396  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| | | ||||||| ||       ||||||||||||||||||||||| |||||  |||    
T  11038 ggtcacacccactaacactctcttttaacacatccaataaaaattaaccatgtgtctcatttttttaattcaatttacttgtaacctgcttatcctgttt 10939  T
Q  397 ctaaa 401  Q
    |||||    
T  10938 ctaaa 10934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 297 - 401
Target Start/End: Complemental strand, 21366 - 21262
Alignment:
Q  297 ggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgcgtatccctttt 396  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| | | ||||||| ||       ||||||||||||||||||||||| |||||  |||    
T  21366 ggtcacacccactaacactctcttttaacacatccaataaaaattaaccatgtgtctcatttttttaattcaatttacttgtaacctgcttatcctgttt 21267  T
Q  397 ctaaa 401  Q
    |||||    
T  21266 ctaaa 21262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 40600737 - 40600829
Alignment:
Q  293 ctagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgc 385  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||||||| ||| |||| |||||       |||||||||||||||||||||||    
T  40600737 ctaggatcacacccactaacactctcttttaacacatccaataaaaattagccatgtatcccatttttttaattcaatttacttgtaacctgc 40600829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 40601452 - 40601391
Alignment:
Q  294 tagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtccca 355  Q
    |||||||||| |||||||||||||||||||||||| | ||||||||| ||| ||||||||||    
T  40601452 tagggtcacacccactaacactctcttttaacacacccaataaaaattagctatgtgtccca 40601391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 20656 - 20594
Alignment:
Q  293 ctagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtccca 355  Q
    |||||||| || |||||||||||||||||||||||| | ||||||||||||  ||||||||||    
T  20656 ctagggtcccacccactaacactctcttttaacacacccaataaaaatcagtcatgtgtccca 20594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 7332 - 7287
Alignment:
Q  284 aagagaaat-ctagggtcacatccactaacactctcttttaacaca 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  7332 aagagaaatgctagggtcacatccactaacactctcttttaacaca 7287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 37355082 - 37355021
Alignment:
Q  294 tagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtccca 355  Q
    ||||||||||||||||||||||||||||||||||| | ||| ||||| ||  ||||||||||    
T  37355082 tagggtcacatccactaacactctcttttaacacaccaaatcaaaattagacatgtgtccca 37355021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 385
Target Start/End: Original strand, 13544547 - 13544648
Alignment:
Q  285 agagaaat-ctagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacct 383  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||| | ||||||||| | | |||| |||||       |||||||||||| ||||||||    
T  13544547 agagaaatgctaggctcacacccactaacactctcttttaacacacccaataaaaattaactatgtatcccatttttttaattcaatttacctgtaacct 13544646  T
Q  384 gc 385  Q
    ||    
T  13544647 gc 13544648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 385
Target Start/End: Complemental strand, 13679926 - 13679825
Alignment:
Q  285 agagaaat-ctagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacct 383  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||| | ||||||||| | | |||| |||||       |||||||||||| ||||||||    
T  13679926 agagaaatgctaggctcacacccactaacactctcttttaacacacccaataaaaattaactatgtatcccatttttttaattcaatttacctgtaacct 13679827  T
Q  384 gc 385  Q
    ||    
T  13679826 gc 13679825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 39220139 - 39220091
Alignment:
Q  293 ctagggtcacatccactaacactctcttttaacacatctaataaaaatc 341  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||| ||||    
T  39220139 ctagggtcacatcaactaacacactcttttaacacatccaataataatc 39220091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 13545246 - 13545175
Alignment:
Q  285 agagaaat-ctagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtccca 355  Q
    |||||||| |||| |||||| ||||| |||||||||||||||||| | ||||| ||| ||| ||||||||||    
T  13545246 agagaaatgctagagtcacacccacttacactctcttttaacacacccaataataattagccatgtgtccca 13545175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 355
Target Start/End: Original strand, 13679227 - 13679298
Alignment:
Q  285 agagaaat-ctagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgtgtccca 355  Q
    |||||||| |||| |||||| ||||| |||||||||||||||||| | ||||| ||| ||| ||||||||||    
T  13679227 agagaaatgctagagtcacacccacttacactctcttttaacacacccaataataattagccatgtgtccca 13679298  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 16499122 - 16499157
Alignment:
Q  293 ctagggtcacatccactaacactctcttttaacaca 328  Q
    ||||||||||| ||||||||||||||||||||||||    
T  16499122 ctagggtcacacccactaacactctcttttaacaca 16499157  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 35368336 - 35368383
Alignment:
Q  293 ctagggtcacatccactaacactctcttttaacacatctaataaaaat 340  Q
    ||||||||||||||||| ||||| |||||||||||| | |||||||||    
T  35368336 ctagggtcacatccactgacactttcttttaacacaccaaataaaaat 35368383  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 27749082 - 27749045
Alignment:
Q  293 ctagggtcacatccactaacactctcttttaacacatc 330  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  27749082 ctagggtcacattcactaacactctcttttaaaacatc 27749045  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 33771492 - 33771427
Alignment:
Q  285 agagaaat-ctagggtcacatccactaacactctcttttaacacatctaataaaaatcagcaatgt 349  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||| | ||| | ||||||| ||||    
T  33771492 agagaaatgctagggtcacacccactaacacactcttttaacacacccaatcataatcagccatgt 33771427  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 51488804 - 51488837
Alignment:
Q  307 actaacactctcttttaacacatctaataaaaat 340  Q
    |||||||||||||||||||||||| |||||||||    
T  51488804 actaacactctcttttaacacatccaataaaaat 51488837  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 51489181 - 51489136
Alignment:
Q  295 agggtcacatccactaacactctcttttaacacatctaataaaaat 340  Q
    ||||||||| | |||||| ||||||||||||||||| |||||||||    
T  51489181 agggtcacacctactaaccctctcttttaacacatcaaataaaaat 51489136  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 51720772 - 51720739
Alignment:
Q  296 gggtcacatccactaacactctcttttaacacat 329  Q
    |||||||| |||||||||||||||||||||||||    
T  51720772 gggtcacacccactaacactctcttttaacacat 51720739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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