View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2331R-Insertion-4 (Length: 136)
Name: NF2331R-Insertion-4
Description: NF2331R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2331R-Insertion-4 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 120; Significance: 8e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 6351339 - 6351212
Alignment:
| Q |
9 |
tcccatccttcagccaccgccaccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaa |
108 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6351339 |
tcccatccttcggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaa |
6351240 |
T |
|
| Q |
109 |
acgacggtgagagattattctcagctgt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6351239 |
acgacggtgagagattattctcagctgt |
6351212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 6328794 - 6328669
Alignment:
| Q |
11 |
ccatccttcagccaccgccaccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaac |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6328794 |
ccatccttcagccaccgccaccgtcgcctccattctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaac |
6328695 |
T |
|
| Q |
111 |
gacggtgagagattattctcagctgt |
136 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
6328694 |
gacggtgagagattattctcagctgt |
6328669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 6336354 - 6336227
Alignment:
| Q |
9 |
tcccatccttcagccaccgccaccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaa |
108 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6336354 |
tcccatccttcggccaccgccgccgtcgcttcccttattgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaa |
6336255 |
T |
|
| Q |
109 |
acgacggtgagagattattctcagctgt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6336254 |
acgacggtgagagattattctcagctgt |
6336227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University