View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2331R-Insertion-5 (Length: 200)
Name: NF2331R-Insertion-5
Description: NF2331R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2331R-Insertion-5 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0434 (1 HSPs) |
| | |
|
| [»] scaffold0049 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 41362926 - 41362836
Alignment:
| Q |
9 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaag-tgcagccgtaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
41362926 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagccggttgaatcaccctccaattagtctcctaaaagctgcagccgtaa |
41362836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 23409557 - 23409480
Alignment:
| Q |
9 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaa |
86 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
23409557 |
aattgagaattacacatataattgcaattgaatgatgatcaaagccagttgaatcaccctccaattagtctcctaaaa |
23409480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 9954250 - 9954346
Alignment:
| Q |
9 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaagtgcagccgtaacccttgt |
105 |
Q |
| |
|
|||||||||||||||||| ||| | |||| ||||||||||||| |||||||||||||||||||| | |||| || ||||||||||||||||||| |
|
|
| T |
9954250 |
aattgagaattacacataaaatcaccgttgattgatgatcaaagccagttgaatcaccctccaattggtctcccaatggtgcagccgtaacccttgt |
9954346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 35023611 - 35023508
Alignment:
| Q |
9 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaagtgcagccgtaacccttgtgtc |
108 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||||| | |||||||| ||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
35023611 |
aattgagaattgcacatagaattacagttgaatgatgatcaaagtcaattgaatca-cctccaattgatctcccaaaagtgcagccgtaacccttgtgtc |
35023513 |
T |
|
| Q |
109 |
gtaac |
113 |
Q |
| |
|
||||| |
|
|
| T |
35023512 |
gtaac |
35023508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 46671480 - 46671583
Alignment:
| Q |
9 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaagtgcagccgtaacccttgtgtc |
108 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| | | |||||||| ||||||||| |||| |||||||||| | ||||||||||||| |
|
|
| T |
46671480 |
aattgagaattacacatagaattacaattgaatgttgatcaaaaccaattgaatca-cctccaattgatctcccaaaagtgcagtcctaacccttgtgtc |
46671578 |
T |
|
| Q |
109 |
gtaac |
113 |
Q |
| |
|
||||| |
|
|
| T |
46671579 |
gtaac |
46671583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 16420118 - 16420023
Alignment:
| Q |
9 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaagtgcagccgtaacccttgtg |
106 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||||||| |||| | |||| ||| | ||||||||||||||||| |
|
|
| T |
16420118 |
aattgagaattacacataaaattgcagttgaatgatgatcaaagccaattgaatcaccctc-aattggtctcccaaactt-cagccgtaacccttgtg |
16420023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 55585289 - 55585387
Alignment:
| Q |
9 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaagtgcagccgtaacccttgtgt |
107 |
Q |
| |
|
||||||||||||||||| || | | |||| ||||||||||||| |||| ||||||||||||||| | |||| || ||||||||||||||||||||| |
|
|
| T |
55585289 |
aattgagaattacacattaaactaccgttgattgatgatcaaagccagttaaatcaccctccaattggtctcccaatggtgcagccgtaacccttgtgt |
55585387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 11776540 - 11776638
Alignment:
| Q |
9 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaagtgcagccgtaacccttgtgt |
107 |
Q |
| |
|
|||||||||||||||||| || | | |||| ||||||||||||| |||||||||||||||||||| | |||| || ||||||||||||||||||||| |
|
|
| T |
11776540 |
aattgagaattacacataaaactacccttgattgatgatcaaagccagttgaatcaccctccaattggtctcccaatggtgcagccgtaacccttgtgt |
11776638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 275525 - 275430
Alignment:
| Q |
9 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaagtgcagccgtaacccttgtg |
106 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| | || ||||||||||||||| | |||| || ||||||||||||||||||| |
|
|
| T |
275525 |
aattgagaattacacataaaattgcagttgaatgatgatcaaagccaatt-aatcaccctccaattggtctcc-caagctgcagccgtaacccttgtg |
275430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0434 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0434
Description:
Target: scaffold0434; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 11044 - 10943
Alignment:
| Q |
9 |
aattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaagtgcagccgtaacccttgtgtc |
108 |
Q |
| |
|
|||||||||||||||| | |||| || |||| |||||||||||||||||||||| ||||| ||||| |||| || ||||| | |||||||||| |||| |
|
|
| T |
11044 |
aattgagaattacacaaaaaattacagttgattgatgatcaaagctagttgaattacccttcaattgatctcccaatagtgccgtcgtaacccttatgtc |
10945 |
T |
|
| Q |
109 |
gt |
110 |
Q |
| |
|
|| |
|
|
| T |
10944 |
gt |
10943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 38874 - 38945
Alignment:
| Q |
36 |
ttgaatgatgatcaaagctagttgaatcaccctccaattagactcctaaaagtgcagccgtaacccttgtgt |
107 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||||||| | |||| || ||||||||||||||||||||| |
|
|
| T |
38874 |
ttgattgatgatcaaagccagttaaatcaccctccaattggtctcccaatggtgcagccgtaacccttgtgt |
38945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University