View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2331R-Insertion-6 (Length: 285)
Name: NF2331R-Insertion-6
Description: NF2331R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2331R-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 4669921 - 4670199
Alignment:
| Q |
9 |
caaagtacaaggtgtcatgcatagataggaatggcatc-atatgcatcttgatattttggaccagtcgaaaagctcactagagaacattt---------c |
98 |
Q |
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| T |
4669921 |
caaagtacaaggtgtcatgcatcgataggaatggcatccatatgtatcttgatattttggactagtcgaaaagctcactagacaacatttagtgactttc |
4670020 |
T |
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| Q |
99 |
acttcactaactttgttaagtcattgtaatttgcatagatatggatgattttggtttggaagctctaatttaccgaccatatagttagacaccacattct |
198 |
Q |
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| T |
4670021 |
acttcactaactttgttaagtcattgtaatttgcatagatatggatgattttggtttggaagctctaatttatcgaccatatagttagacaccacattct |
4670120 |
T |
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| Q |
199 |
cacaactattagaatataattctgtttgttatgtttagtttaattagttaacaagtttgttataggattgcttgcttgt |
277 |
Q |
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| T |
4670121 |
cacaactattagaatataattctgtttgttatgtttagtttaattagttaacaagtttgttataggattgcttgcttgt |
4670199 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 36360203 - 36360248
Alignment:
| Q |
207 |
ttagaatataattctgtttgttatgtttagtttaattagttaacaa |
252 |
Q |
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| T |
36360203 |
ttagaatataattcagtttgttaagtttagtttagttagttaacaa |
36360248 |
T |
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