View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2331R-Insertion-7 (Length: 443)

Name: NF2331R-Insertion-7
Description: NF2331R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2331R-Insertion-7
NF2331R-Insertion-7
[»] chr1 (4 HSPs)
chr1 (9-231)||(14797742-14797964)
chr1 (9-231)||(14806616-14806838)
chr1 (268-443)||(14798003-14798178)
chr1 (268-443)||(14806877-14807052)
[»] chr8 (5 HSPs)
chr8 (268-427)||(35891115-35891274)
chr8 (268-424)||(33173362-33173518)
chr8 (102-231)||(35890938-35891067)
chr8 (105-231)||(33173566-33173692)
chr8 (109-154)||(21519559-21519604)
[»] chr5 (2 HSPs)
chr5 (296-429)||(32151392-32151528)
chr5 (102-231)||(32151208-32151337)
[»] chr2 (2 HSPs)
chr2 (102-219)||(42834591-42834708)
chr2 (351-416)||(31266108-31266176)
[»] chr7 (3 HSPs)
chr7 (102-185)||(47535394-47535477)
chr7 (366-428)||(27347284-27347346)
chr7 (112-192)||(37127109-37127189)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 14797742 - 14797964
Alignment:
Q  9 aacttcggggtgaaaattatgatgaatggccaaaagctacgaggatctctttacgtgcatgatgtacagtagcagatcttgacttannnnnnngggggtg 108  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| |||||||||| ||||||||||||       || ||||    
T  14797742 aacttcggggtgaaaattatgatgaatgggcaaaggctacgaggacctctttacgtgcatgacgtacagtagcggatcttgacttatttttttggaggtg 14797841  T
Q  109 ccgaactattatgaaatatatactaaaatgattcaagtattagcaaaaagtgttaagggttctggtggtttgatttgctttaaatgggtgtggatgttgc 208  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14797842 ccgaactattatgaaatatatactaaaatggttcaagtattagcaaaaagtgttaagggttctggtggtttgatttgctttaaatgggtgtggatgttgc 14797941  T
Q  209 gggtttgagtctcattaggaatg 231  Q
    ||||||||||| |||||||||||    
T  14797942 gggtttgagtcccattaggaatg 14797964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 14806616 - 14806838
Alignment:
Q  9 aacttcggggtgaaaattatgatgaatggccaaaagctacgaggatctctttacgtgcatgatgtacagtagcagatcttgacttannnnnnngggggtg 108  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| |||||||||| ||||||||||||       || ||||    
T  14806616 aacttcggggtgaaaattatgatgaatgggcaaaggctacgaggacctctttacgtgcatgacgtacagtagcggatcttgacttatttttttggaggtg 14806715  T
Q  109 ccgaactattatgaaatatatactaaaatgattcaagtattagcaaaaagtgttaagggttctggtggtttgatttgctttaaatgggtgtggatgttgc 208  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14806716 ccgaactattatgaaatatatactaaaatggttcaagtattagcaaaaagtgttaagggttctggtggtttgatttgctttaaatgggtgtggatgttgc 14806815  T
Q  209 gggtttgagtctcattaggaatg 231  Q
    ||||||||||| |||||||||||    
T  14806816 gggtttgagtcccattaggaatg 14806838  T

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Target: chr1; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 268 - 443
Target Start/End: Original strand, 14798003 - 14798178
Alignment:
Q  268 cactaacgatggatcaaacacacgaccactggattctaaaagcatcccctaaccactgcaacaactagaaattctataatctgatatgcataatactata 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14798003 cactaacgatggatcaaacacacgaccactggattctaaaagcatcccctaaccactgcaacaactagaaattctataatctgatatgcataatactata 14798102  T
Q  368 tataaaggaaacttggggggtaccatggctcccatgggtccccaagtagatccgccactgatgatgtaaatggggg 443  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  14798103 tataaaggaaacttggggggtaccatggctcccataggtccccaagtagatccgccactgatgacgtaaatggggg 14798178  T

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Target: chr1; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 268 - 443
Target Start/End: Original strand, 14806877 - 14807052
Alignment:
Q  268 cactaacgatggatcaaacacacgaccactggattctaaaagcatcccctaaccactgcaacaactagaaattctataatctgatatgcataatactata 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14806877 cactaacgatggatcaaacacacgaccactggattctaaaagcatcccctaaccactgcaacaactagaaattctataatctgatatgcataatactata 14806976  T
Q  368 tataaaggaaacttggggggtaccatggctcccatgggtccccaagtagatccgccactgatgatgtaaatggggg 443  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  14806977 tataaaggaaacttggggggtaccatggctcccataggtccccaagtagatccgccactgatgacgtaaatggggg 14807052  T

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Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 268 - 427
Target Start/End: Original strand, 35891115 - 35891274
Alignment:
Q  268 cactaacgatggatcaaacacacgaccactggattctaaaagcatcccctaaccactgcaacaactagaaattctataatctgatatgcataatactata 367  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  35891115 cactaacgatggatcaaacacacgacctctggattgtaaaagcaccccctaaccactgtaacaactggaaattctataatttgatatgcataatactata 35891214  T
Q  368 tataaaggaaacttggggggtaccatggctcccatgggtccccaagtagatccgccactg 427  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  35891215 tataaaggaaacttggggggtaccatgactcccatgggtctccaagtagatccgccactg 35891274  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 268 - 424
Target Start/End: Complemental strand, 33173518 - 33173362
Alignment:
Q  268 cactaacgatggatcaaacacacgaccactggattctaaaagcatcccctaaccactgcaacaactagaaattctataatctgatatgcataatactata 367  Q
    ||||||||||||||| ||||||| |||  |||||| |||||||| |||||||||||||||| |||| |||||| |||||| |||||||||||||||||||    
T  33173518 cactaacgatggatcgaacacacaacctttggattgtaaaagcaccccctaaccactgcaataactggaaattttataatttgatatgcataatactata 33173419  T
Q  368 tataaaggaaacttggggggtaccatggctcccatgggtccccaagtagatccgcca 424  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  33173418 tataaaggaaacttggggggtaccatgactcccatgggttcccaagtagatccgcca 33173362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 35890938 - 35891067
Alignment:
Q  102 gggggtgccgaactattatgaaatatatactaaaatgattcaagtattagcaaaaagtgttaagggttctggtggtttgatttgctttaaatgggtgtgg 201  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  35890938 gggggtgccgaactattatggaatatatattaaaatgattcaagtattagtaaaacgtgttaagggttctggtggttagatttgctttaaatgggtgtgg 35891037  T
Q  202 atgttgcgggtttgagtctcattaggaatg 231  Q
    |||||| |||||||||||  ||||||||||    
T  35891038 atgttgtgggtttgagtcctattaggaatg 35891067  T

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Target: chr8; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 33173692 - 33173566
Alignment:
Q  105 ggtgccgaactattatgaaatatatactaaaatgattcaagtattagcaaaaagtgttaagggttctggtggtttgatttgctttaaatgggtgtggatg 204  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||    
T  33173692 ggtgccgaactattatggaatatatactaaaataattcaagtattagcaaagaatgttaagggttctggtggtttgaattgctttaaatgggtgtggatg 33173593  T
Q  205 ttgcgggtttgagtctcattaggaatg 231  Q
    |||||| ||  |||| |||||||||||    
T  33173592 ttgcggattcaagtcccattaggaatg 33173566  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 21519604 - 21519559
Alignment:
Q  109 ccgaactattatgaaatatatactaaaatgattcaagtattagcaa 154  Q
    ||||||||||||| |||||||| |||||||||||| ||| ||||||    
T  21519604 ccgaactattatggaatatatattaaaatgattcaggtaatagcaa 21519559  T

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Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 296 - 429
Target Start/End: Original strand, 32151392 - 32151528
Alignment:
Q  296 ctggattctaaaagcatcccctaaccactgcaacaactagaaattctataatctgatatgcataatactatatataaaggaaacttgggggg---tacca 392  Q
    ||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  32151392 ctggattgtaaaagcaccccctaaccactgcaacaactggaaattctataatctgatatgcataatactatatataaaggaaacttggggggtactacca 32151491  T
Q  393 tggctcccatgggtccccaagtagatccgccactgat 429  Q
    |||||||||||||||||||||||||||||||||||||    
T  32151492 tggctcccatgggtccccaagtagatccgccactgat 32151528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 32151208 - 32151337
Alignment:
Q  102 gggggtgccgaactattatgaaatatatactaaaatgattcaagtattagcaaaaagtgttaagggttctggtggtttgatttgctttaaatgggtgtgg 201  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32151208 gggggtgccgaactattatggaatatatactaaaatgattcaagtattagcaaaaaatgttaagggttctggtggtttgatttgctttaaatgggtgtgg 32151307  T
Q  202 atgttgcgggtttgagtctcattaggaatg 231  Q
    ||||||||| || ||||| |||||||||||    
T  32151308 atgttgcggtttcgagtcccattaggaatg 32151337  T

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Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 42834708 - 42834591
Alignment:
Q  102 gggggtgccgaactattatgaaatatatactaaaatgattcaagtattagcaaaaagtgttaagggttctggtggtttgatttgctttaaatgggtgtgg 201  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||| |||| |||||||    
T  42834708 gggggtgccgaactattatggaatatatactaaaatgattcaagaataagcaaaaaatgttaagggttctggtagtttgatttgcttaaaattggtgtgg 42834609  T
Q  202 atgttgcgggtttgagtc 219  Q
    ||| ||| |||| |||||    
T  42834608 atggtgcaggttcgagtc 42834591  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 31266176 - 31266108
Alignment:
Q  351 atatgcataatactatatataa---aggaaacttggggggtaccatggctcccatgggtccccaagtag 416  Q
    ||||||||||||||||| |||    || ||||||||||| | |||||||||||| ||||||||||||||    
T  31266176 atatgcataatactatacatattatagtaaacttgggggatgccatggctcccacgggtccccaagtag 31266108  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 47535477 - 47535394
Alignment:
Q  102 gggggtgccgaactattatgaaatatatactaaaatgattcaagtattagcaaaaagtgttaagggttctggtggtttgatttg 185  Q
    |||||| ||||||||||||| |||||||| ||||||||||||| || ||||||||   |||||| | | |||||||||||||||    
T  47535477 gggggtaccgaactattatggaatatatattaaaatgattcaaataatagcaaaataagttaagtgctttggtggtttgatttg 47535394  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 428
Target Start/End: Complemental strand, 27347346 - 27347284
Alignment:
Q  366 tatataaaggaaacttggggggtaccatggctcccatgggtccccaagtagatccgccactga 428  Q
    |||||| || |||||||| ||||  | ||||| ||||||||||||||||||||| ||||||||    
T  27347346 tatatatagaaaacttggagggtgtcgtggcttccatgggtccccaagtagatctgccactga 27347284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 37127109 - 37127189
Alignment:
Q  112 aactattatgaaatatatactaaaatgattcaagtattagcaaaaagtgttaagggttctggtggtttgatttgctttaaa 192  Q
    ||||||| || |||||||| ||||||||||||  || ||||||||   |||||| | ||||||||| ||||||||| ||||    
T  37127109 aactattttggaatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggtggtctgatttgctgtaaa 37127189  T

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