View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2331R-Insertion-8 (Length: 480)
Name: NF2331R-Insertion-8
Description: NF2331R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2331R-Insertion-8 |
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| [»] scaffold0011 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 479
Target Start/End: Complemental strand, 205579 - 205109
Alignment:
| Q |
9 |
taaaaattatgaaataaatatgattgaagtgaaagccatatttctttggtatcccttctgtggttgaagtggaaatgttatcttactaatattttcatac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
205579 |
taaaaattatgaaataaatatgattgaagtgaaagccatatttctttggtatcccttgtgtggttgaagtggaaatgttatcttactaatattttcatac |
205480 |
T |
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| Q |
109 |
ttgaatggcagggacatatcacatatattttatatatctgttttggcattttattatttcatcccccatgtattttccccacactctccttccaaccata |
208 |
Q |
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| T |
205479 |
tagaatggctggggcatatcagatatattttttatatctgttttggcattttattatttcatcccccatgtattttcgccacactctccttccaaccata |
205380 |
T |
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| Q |
209 |
aaacgtgatccaaaatactagtttttcttcgcattgaaaatatattgctatccaactatcgaatcaaagtgacgatagatctgaggaaccctttgaagcg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
205379 |
gaacgtgatccaaaatactagtttttcttcgcattgaaaatatattgctatccaactatcgaatcaaagtggcgatagatctaaggaaccctttgaagcg |
205280 |
T |
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| Q |
309 |
aggtactgtccagaaatactagaaaagaaacctatggattttcttcaagtacgaaagactacccaacttctgctacaaatatgggaggattggccatcag |
408 |
Q |
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||||||||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
205279 |
aggtactgtgctgaaataccagaaaagaaacctatggattttcttcaagtacggaagactacccaacttctgctacaaatgtgggaggattagccatcag |
205180 |
T |
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| Q |
409 |
atgaaagaatgtgaagaggaaacaggacaagatagtgaagggtatacagacgtgaaagaacaggatcaagc |
479 |
Q |
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| T |
205179 |
atgaaagaatgtgaagaggaaacgggacaagatagtgaagggtatacagaagtggaagaacaggatcaagc |
205109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 479
Target Start/End: Complemental strand, 211656 - 211186
Alignment:
| Q |
9 |
taaaaattatgaaataaatatgattgaagtgaaagccatatttctttggtatcccttctgtggttgaagtggaaatgttatcttactaatattttcatac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
211656 |
taaaaattatgaaataaatatgattgaagtgaaagccatatttctttggtatcccttgtgtggttgaagtggaaatgttatcttactaatattttcatac |
211557 |
T |
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| Q |
109 |
ttgaatggcagggacatatcacatatattttatatatctgttttggcattttattatttcatcccccatgtattttccccacactctccttccaaccata |
208 |
Q |
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| T |
211556 |
tagaatggctggggcatatcagatatattttttatatctgttttggcattttattatttcatcccccatgtattttcgccacactctccttccaaccata |
211457 |
T |
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| Q |
209 |
aaacgtgatccaaaatactagtttttcttcgcattgaaaatatattgctatccaactatcgaatcaaagtgacgatagatctgaggaaccctttgaagcg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
211456 |
gaacgtgatccaaaatactagtttttcttcgcattgaaaatatattgctatccaactatcgaatcaaagtggcgatagatctaaggaaccctttgaagcg |
211357 |
T |
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| Q |
309 |
aggtactgtccagaaatactagaaaagaaacctatggattttcttcaagtacgaaagactacccaacttctgctacaaatatgggaggattggccatcag |
408 |
Q |
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||||||||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
211356 |
aggtactgtgctgaaataccagaaaagaaacctatggattttcttcaagtacggaagactacccaacttctgctacaaatgtgggaggattagccatcag |
211257 |
T |
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| Q |
409 |
atgaaagaatgtgaagaggaaacaggacaagatagtgaagggtatacagacgtgaaagaacaggatcaagc |
479 |
Q |
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| T |
211256 |
atgaaagaatgtgaagaggaaacgggacaagatagtgaagggtatacagaagtggaagaacaggatcaagc |
211186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 224705 - 224634
Alignment:
| Q |
190 |
cactctccttccaaccataaaacgtgatccaaaatactagtttttcttcgcattgaaaatatattgctatcc |
261 |
Q |
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| T |
224705 |
cactctccttccaaccataaaacgtgatccaaaatactagtttttcttcgcattgaaaatatattgctatcc |
224634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 267 - 480
Target Start/End: Complemental strand, 8371844 - 8371631
Alignment:
| Q |
267 |
tcgaatcaaagtgacgatagatctgaggaaccctttgaagcgaggtactgtccagaaatactagaaaagaaacctatggattttcttcaagtacgaaaga |
366 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||| ||||||||||||||| |
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| T |
8371844 |
tcgaatcaaagtggcgatagatctgaggaaccctttgaagcgaggtactgtgctgaaataccagaaaagaaacctatgaatttttttcaagtacgaaaga |
8371745 |
T |
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| Q |
367 |
ctacccaacttctgctacaaatatgggaggattggccatcagatgaaagaatgtgaagaggaaacaggacaagatagtgaagggtatacagacgtgaaag |
466 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
8371744 |
ttacccaacttctgctacaaatgtgggaggattggccatcagatgaaggaatgtgaagaggaaacgggacaagatagtgaagggtatacagacgtggaag |
8371645 |
T |
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| Q |
467 |
aacaggatcaagcc |
480 |
Q |
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| T |
8371644 |
aacaggatcaagcc |
8371631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 5086293 - 5086460
Alignment:
| Q |
9 |
taaaaattatgaaataaatatgattgaagtgaaagccatatttctttggtatcccttctgtggttgaagtggaaatgttatcttactaatattttcatac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||||| |
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| T |
5086293 |
taaaaattatgaaataaatatgattgaagtgaaagccatatttctttggcatcccttctgtggttgaaatgaaagtgttatcttactaatattttcatac |
5086392 |
T |
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| Q |
109 |
ttgaatggcagggacatatcacatatattttatatatctgttttggcattttattatttcatcccccatg |
178 |
Q |
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| T |
5086393 |
ttgaatggctggggcatatcac--atattttatatatatgttttggcattttattatttcatcccccatg |
5086460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 8405333 - 8405272
Alignment:
| Q |
100 |
ttttcatacttgaatggcagggacatatcacatatattttatatatctgttttggcattttat |
162 |
Q |
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| T |
8405333 |
ttttcatacttggacggctgggacatgtcacatat-tcttatatatctgttttggcactttat |
8405272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 283 - 461
Target Start/End: Original strand, 34495852 - 34496030
Alignment:
| Q |
283 |
atagatctgaggaaccctttgaagcgaggtactgtccagaaatactagaaaagaaacctatggattttcttcaagtacgaaagactacccaacttctgct |
382 |
Q |
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|||||||||||||||||| |||||||||| | ||| ||| ||| | ||||||| ||| |||||||||||||||||||| | || ||||| ||||||| |
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| T |
34495852 |
atagatctgaggaaccctctgaagcgagggattgtgttgaagtaccaaaaaagaagcctctggattttcttcaagtacgagcgtcttcccaatttctgct |
34495951 |
T |
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| Q |
383 |
acaaatatgggaggattggccatcagatgaaagaatgtgaagaggaaacaggacaagatagtgaagggtatacagacgt |
461 |
Q |
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| T |
34495952 |
ataaatgtgggaggattggccaccagatgaaggaatgtgaggaggaaacgggacaagatggtgaaggatacacagacgt |
34496030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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