View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2331_high_2 (Length: 435)
Name: NF2331_high_2
Description: NF2331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2331_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 421
Target Start/End: Complemental strand, 1701925 - 1701514
Alignment:
| Q |
10 |
aagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttc |
109 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1701925 |
aagaatatcgagtaaaatgatcaacaaacacaagataatatttgtaaccatgaactgaagtgataggagagggtccccaaacatcagaaaataacagttc |
1701826 |
T |
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| Q |
110 |
aagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatgaannnnnnnattttctaagttc |
209 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |
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| T |
1701825 |
aagaggagctgtggttttgatagaagaaacagaaaaaggaagcttatgacttttattaatatggcaagaattacaatgaaattttttattttctaaattc |
1701726 |
T |
|
| Q |
210 |
ctaaaactgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaag |
309 |
Q |
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|||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
1701725 |
ctaaaattgccacaagtagacatcatttgtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaag |
1701626 |
T |
|
| Q |
310 |
caagagtagtgggttgatattgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcac |
409 |
Q |
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|||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
1701625 |
caagagcagtgggttgatattgagacttaggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttac |
1701526 |
T |
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| Q |
410 |
acagaaaaaggt |
421 |
Q |
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|||||||||||| |
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| T |
1701525 |
acagaaaaaggt |
1701514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 74 - 421
Target Start/End: Complemental strand, 181434 - 181087
Alignment:
| Q |
74 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181434 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctgcggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
181335 |
T |
|
| Q |
174 |
caagaattacaatgaannnnnnnattttctaagttcctaaaactgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgag |
273 |
Q |
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| T |
181334 |
caagaattacaatgaaattttttattttctaagttcctaaaattgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgag |
181235 |
T |
|
| Q |
274 |
catgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgatattgagacatataatgaaaggtgtagagatcactgttacttgaacc |
373 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
181234 |
catgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgatattgagacatataatgaaaggtgtagagatcactgttactggaacc |
181135 |
T |
|
| Q |
374 |
gcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181134 |
gcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggt |
181087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 5400652 - 5400484
Alignment:
| Q |
19 |
gagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagc |
118 |
Q |
| |
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|||| ||||| |||||||| ||||||||||| |||||||||||| || || ||||| || ||||||||||||||||| || | ||||||| |||| |
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| T |
5400652 |
gagtgaaatggtcaacaaagacaagataatacctgtaaccattaatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggaga |
5400553 |
T |
|
| Q |
119 |
tacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
187 |
Q |
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| |||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
5400552 |
gaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
5400484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 3541627 - 3541459
Alignment:
| Q |
19 |
gagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagc |
118 |
Q |
| |
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|||| ||||| |||||||| ||||||||||| ||||||||||| | || || ||||| || ||||||||||||||||| || | ||||||| |||| |
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| T |
3541627 |
gagtgaaatggtcaacaaagacaagataatacttgtaaccattgatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggaga |
3541528 |
T |
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| Q |
119 |
tacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
187 |
Q |
| |
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| |||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
3541527 |
gaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
3541459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 31098901 - 31098805
Alignment:
| Q |
20 |
agtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagagga |
116 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||| | | | | || ||||| |||| ||||||||||||||| | |||||||||||| |
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| T |
31098901 |
agtaaaatgatcaacgaacacaagataatatttgtatccactgatagtgttaattggagagggtctccaaacatcagaaaaaatgagttcaagagga |
31098805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 26592523 - 26592600
Alignment:
| Q |
20 |
agtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcaga |
97 |
Q |
| |
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|||||| || ||||||||||||||||| ||| | |||||||||| || || ||||| || ||||||||||||||||| |
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| T |
26592523 |
agtaaagtggtcaacaaacacaagatagtatctataaccattaatggatgttataggggatggtccccaaacatcaga |
26592600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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