View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2331_low_1 (Length: 479)
Name: NF2331_low_1
Description: NF2331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2331_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Complemental strand, 1573515 - 1573070
Alignment:
| Q |
20 |
gtctcattaatccatccccacaaaatccttcnnnnnnncacttgatcatagaaagtctttgaagcatagtatattccatagtccaaaagcaacccaatac |
119 |
Q |
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| T |
1573515 |
gtctcattaatccatccccacaaaatccttctttttttcacttgatcatagaaagtctttgaagcatagtatattccatagtccaaaagcaacccaatac |
1573416 |
T |
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| Q |
120 |
ccacgtcctcaagtgggttatcaggaatccatgtatcattttcaataaaataagtcccaattgcataactatccactcttgtatcatccaaactagcctt |
219 |
Q |
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| T |
1573415 |
ccacatcctcaagtgggttatcaggaatccatgtatcattttcaataaaataagtcccaattgcataactatccactcttgtatcatccaaactagcctt |
1573316 |
T |
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| Q |
220 |
taacacatgcttaacatgtggtccatttactgatgtgtccaaaccatttgacccgtttattgaaaccgggtaaaagtccacacattcccacatacccgta |
319 |
Q |
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| T |
1573315 |
taacacatgcttaacatgtggtccatttactgatgtgtccaaaccatttgacccgtttatagaaaccgggtaaaaatccacacattcccacatacccgta |
1573216 |
T |
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| Q |
320 |
cccggaaccgcatgtaagtagttatcatttagttcaaaatttataaaatttgtggttttgtaaaccaatgaaagacctgtttgtcctttctttgatccaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1573215 |
cccggaaccgcatgtaagtagttatcatttagttcaaaatttataaaatttgtggttttgtaaaccaatgaaagacctgtttgtcctttctttgatccaa |
1573116 |
T |
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| Q |
420 |
ttaggactctccattttccatctggcccgatccaaccggtggttgg |
465 |
Q |
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| T |
1573115 |
ttaggactctccattttccatctggcccgatccaaccagtggttgg |
1573070 |
T |
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