View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_high_21 (Length: 291)
Name: NF2332_high_21
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 53056622 - 53056888
Alignment:
| Q |
9 |
gacatcatcaggatacctggtgtttgaagatgtcctcatgcatctgcattgtctttttgatggattctatgttgtttctgtcaagcatcctcctatccat |
108 |
Q |
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| T |
53056622 |
gacatcttcaggatacctggtgtttgaagatgtcctcatgcatctgcattgtctttttgatggattctatgttgtttctgtcaagcatcctcctatccat |
53056721 |
T |
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| Q |
109 |
gatgggacctggcaatttattgattctagtcctatgatggttattggtcagcctccctttgttctgataataatgctcccacagctaacttattgctctt |
208 |
Q |
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| T |
53056722 |
gatgggaccttgcaatttattgattctagtcctatgatggttattggtcagcctccctttgttctgataataatgctcccacagctaacttattgctctt |
53056821 |
T |
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| Q |
209 |
taccaaggttgctacaagatttatggaacattcaattttggttcccatacctaaatacaataattaa |
275 |
Q |
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| T |
53056822 |
taccaaggttgctacaagatttatggaacattcaattttggttcccatacctaaatacaataattaa |
53056888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 15909439 - 15909366
Alignment:
| Q |
20 |
gatacctggtgtttgaagatgtcctcatgcatctgcattgtctttttgatggattctatgttgtttctgtcaag |
93 |
Q |
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|||||||||| ||||||||||||||| || ||||||||||||||| | |||||||| ||||||||||||||||| |
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| T |
15909439 |
gatacctggtttttgaagatgtcctcttgtatctgcattgtctttctaatggattccatgttgtttctgtcaag |
15909366 |
T |
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