View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_low_14 (Length: 410)
Name: NF2332_low_14
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 88 - 391
Target Start/End: Original strand, 34484775 - 34485078
Alignment:
| Q |
88 |
ttagcaacatgattaccattgttaacaacaagattaatgttatcaacctcttgcaaattctcttcatctccttcatcttcatcttccaaaggcaaccttt |
187 |
Q |
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| T |
34484775 |
ttagcaacatgattaccattgttaacaacaagattaatgttatcaacctcttgaaaattctcttcatctccttcatcttcatcttccaaaggcaaccttt |
34484874 |
T |
|
| Q |
188 |
cataagtagcattagcaaaagttgcggcaacaaccatcaccggccccgacgcaatcaacgacccgataaccaatcctccaacaacctgcccctgacctcc |
287 |
Q |
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| T |
34484875 |
cataagtagcattagcaaaagttgcagcaacaaccatcaccggccccgacgcaatcaacgacccgataaccaatcctccaacaacctgcccctgacctcc |
34484974 |
T |
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| Q |
288 |
agcaagataaacagtcagtccagtagcatcaggcggcgaaggcggaggcaaaaaagcaccgctgagtgacagaatgtgacacctcccttgaagagatatc |
387 |
Q |
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| T |
34484975 |
agcaagataaacagtcagtccagtagcatcaggcggcgaaggcggaggcaaaaaagcaccgctgagtgacagaatgtgacacctcccttgaagagatatc |
34485074 |
T |
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| Q |
388 |
attc |
391 |
Q |
| |
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|||| |
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| T |
34485075 |
attc |
34485078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 30679104 - 30679183
Alignment:
| Q |
265 |
ccaacaacctgcccctgacctccagcaagataaacagtcagtccagtagcatcaggcggcgaaggcggaggcaaaaaagc |
344 |
Q |
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| T |
30679104 |
ccaacaacctgcccctgaccaccagctaaataaacagttaatccagtcgctccagccggagaaggcggaggtagaaaagc |
30679183 |
T |
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