View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2333_high_1 (Length: 335)

Name: NF2333_high_1
Description: NF2333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2333_high_1
NF2333_high_1
[»] chr4 (1 HSPs)
chr4 (17-322)||(27692653-27692958)
[»] chr1 (11 HSPs)
chr1 (54-198)||(9464469-9464613)
chr1 (54-192)||(8921053-8921191)
chr1 (54-194)||(8942372-8942512)
chr1 (54-194)||(8964867-8965007)
chr1 (54-194)||(9104606-9104746)
chr1 (54-190)||(9488909-9489045)
chr1 (54-115)||(9233674-9233735)
chr1 (74-181)||(8873703-8873810)
chr1 (54-192)||(8932458-8932596)
chr1 (55-133)||(8956439-8956517)
chr1 (54-194)||(9320257-9320397)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 27692958 - 27692653
Alignment:
Q  17 caaagtagctgttaaggtattgaataagtctcaaaccaatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtg 116  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27692958 caaagtagctgttaaggtattgaccaagtctcaaaccaatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaacgtggtg 27692859  T
Q  117 caactggttggattttgtgccgaaagaacaaagcaagctctggtttacgagttcatgcctaatggttctcttgataaacacacgttttcacaagagcaag 216  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  27692858 caactggttggattctgtgctgaaagaacaaagcaagctctggtttacgagttcatgcctaatggttctcttgataaacacatgttttcacatgagcaag 27692759  T
Q  217 gacacttgtcgtcgttaagctatgagaaaatttacgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcat 316  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692758 gacacttgtcgtcgttaagctacgagaaaatctacgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcat 27692659  T
Q  317 acactt 322  Q
    ||||||    
T  27692658 acactt 27692653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 198
Target Start/End: Complemental strand, 9464613 - 9464469
Alignment:
Q  54 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 153  Q
    |||||||| || ||||||||||||||||| ||||||||||  ||||  ||||| |||||||| || ||  |||| |||||||  || | ||||||   ||    
T  9464613 aatggacaggaattcatcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgttgagaaaacaaaaagag 9464514  T
Q  154 ctctggtttacgagttcatgcctaatggttctcttgataaacaca 198  Q
    | || ||||| |||||||||||||| | ||||||||| |||||||    
T  9464513 cacttgtttatgagttcatgcctaacgattctcttgaaaaacaca 9464469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 8921191 - 8921053
Alignment:
Q  54 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 153  Q
    ||||| ||||| ||||| ||||||||||||||||| |||| ||| | ||| |  |||||||||| ||| |||||||||||||  ||  || |||| |  |    
T  8921191 aatgggcaagatttcattaatgaagttgcaaccataggaaaaatacatcacgccaatgtggtgcgacttgttggattttgtgttgagggatcaaaacgtg 8921092  T
Q  154 ctctggtttacgagttcatgcctaatggttctcttgata 192  Q
    |||| ||||| || |||||||| ||||| ||||||||||    
T  8921091 ctcttgtttatgatttcatgccaaatggctctcttgata 8921053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 8942512 - 8942372
Alignment:
Q  54 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 153  Q
    ||||| ||||| |||||||||||||||||||| || |||||||| | |||    |||||||||| |||  ||||||||||||  ||  || ||||   ||    
T  8942512 aatgggcaagatttcatcaatgaagttgcaacaataggaagaatacatcacaccaatgtggtgcgacttattggattttgtgttgagggatcaaaaagag 8942413  T
Q  154 ctctggtttacgagttcatgcctaatggttctcttgataaa 194  Q
    |||| ||||| || |||||||| ||||| ||||||||||||    
T  8942412 ctcttgtttatgatttcatgcccaatggctctcttgataaa 8942372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 8965007 - 8964867
Alignment:
Q  54 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 153  Q
    ||||| || ||||| || |||||||| |||||||||||||| || | |||| |||||||||||||| |  |||| ||||||| |||  || |||| |  |    
T  8965007 aatgggcaggactttattaatgaagtagcaaccattggaaggatacatcatttgaatgtggtgcaattaattggtttttgtgtcgagggatcaaaccgtg 8964908  T
Q  154 ctctggtttacgagttcatgcctaatggttctcttgataaa 194  Q
    |||| ||||| || |||||| ||||||| || |||||||||    
T  8964907 ctcttgtttatgaattcatgtctaatggatcccttgataaa 8964867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 9104606 - 9104746
Alignment:
Q  54 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 153  Q
    |||||||||||||| || | |||||| |||||||||||||| || | |||| ||||||| || ||| |  |||||||||||   ||  || |||| |  |    
T  9104606 aatggacaagactttattagtgaagtagcaaccattggaaggatacatcatttgaatgtagtacaattatttggattttgtattgagggatcaaaacgtg 9104705  T
Q  154 ctctggtttacgagttcatgcctaatggttctcttgataaa 194  Q
    |||| ||||| || |||||||||||||| ||||||||||||    
T  9104706 ctcttgtttatgaattcatgcctaatggatctcttgataaa 9104746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 9489045 - 9488909
Alignment:
Q  54 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 153  Q
    |||||||| || ||||||||||||||||| || |||||||  ||||  ||||| || ||||| || ||  |||| |||||||  || | ||||||   ||    
T  9489045 aatggacaggaattcatcaatgaagttgctacgattggaacgattcaccatgttaacgtggttcacctaattggcttttgtgttgagaaaacaaaaagag 9488946  T
Q  154 ctctggtttacgagttcatgcctaatggttctcttga 190  Q
    | || ||||| ||||||||||||||||||||||||||    
T  9488945 cacttgtttatgagttcatgcctaatggttctcttga 9488909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 9233674 - 9233735
Alignment:
Q  54 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggt 115  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| | |||||| ||||||||    
T  9233674 aatggacaagattttatcaacgaagttgcgaccattggaagaatacatcatgttaatgtggt 9233735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 8873703 - 8873810
Alignment:
Q  74 tgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaagctctggtttacgagttcatg 173  Q
    |||||| ||||||||||| ||||| | |||| |||||||||||||| |  ||||||||||  ||||  || |||| |  ||||| ||||| ||||| |||    
T  8873703 tgaagtagcaaccattgggagaatacatcatttgaatgtggtgcaattaattggattttgcaccgagggatcaaaacgtgctcttgtttatgagtttatg 8873802  T
Q  174 cctaatgg 181  Q
    ||||||||    
T  8873803 cctaatgg 8873810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 8932596 - 8932458
Alignment:
Q  54 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 153  Q
    ||||||||||| ||||| | |||||||||||| || |||| ||| | |||    |||||||||| ||| |||||||||||||  || | | |||| |  |    
T  8932596 aatggacaagatttcattagtgaagttgcaactataggaaaaatacatcacaccaatgtggtgcgacttgttggattttgtgttgagaaatcaaaacgtg 8932497  T
Q  154 ctctggtttacgagttcatgcctaatggttctcttgata 192  Q
    |||| ||||| || |||||||| ||||| ||||||||||    
T  8932496 ctcttgtttatgatttcatgcccaatggctctcttgata 8932458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 8956517 - 8956439
Alignment:
Q  55 atggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttg 133  Q
    |||||||||| ||||| ||||||||||||||||| |||| ||| | |||    |||||||||| ||| |||||||||||    
T  8956517 atggacaagatttcattaatgaagttgcaaccataggaaaaatacatcacaccaatgtggtgcgacttgttggattttg 8956439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 9320397 - 9320257
Alignment:
Q  54 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 153  Q
    ||||||||||| ||||| | |||||| |||||||| |||||||| | |||    |||||||| | |||  |||| |||||||  ||| || ||||||  |    
T  9320397 aatggacaagatttcattagtgaagtcgcaaccataggaagaatacatcacaccaatgtggttcgacttattgggttttgtgttgaaggatcaaagcgtg 9320298  T
Q  154 ctctggtttacgagttcatgcctaatggttctcttgataaa 194  Q
    |||| ||||| || |||||| | ||||| ||||||||||||    
T  9320297 ctcttgtttatgaattcatgtccaatggctctcttgataaa 9320257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University