View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2333_high_2 (Length: 274)
Name: NF2333_high_2
Description: NF2333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2333_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 30810259 - 30810123
Alignment:
| Q |
16 |
aaaataaatgtgaagggaggatttatttaacctgtacttaaagagtaggtgaagagaagttgagaggagcttttaacatgacaggatatagaagaataac |
115 |
Q |
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| T |
30810259 |
aaaataaatgtgaagggaggatttatttaacttgtacttaaagagtaggtgaagagaagttgaggggagcttttaacatgacaggagatagaagaataac |
30810160 |
T |
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| Q |
116 |
atgaatttttagacttagtaaattagaattttaatac |
152 |
Q |
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| T |
30810159 |
atgaatttttagactgagtaaattagaattttaatac |
30810123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 30810122 - 30810070
Alignment:
| Q |
188 |
taacttgtaagttttggtgaattttgtcatttaaattttcaaaatagcagcaa |
240 |
Q |
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| T |
30810122 |
taacttgtaagttttggtgaattttgtcatttaaattttcaaaatagcagcaa |
30810070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 30819840 - 30819705
Alignment:
| Q |
20 |
taaatgtgaagggaggattta-tttaacctgtacttaaagagtaggtgaagagaagttgagaggagcttttaacatgacagga--tatagaagaataaca |
116 |
Q |
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| T |
30819840 |
taaatgtgaagggaggattgaatttaatttttacttagagagtaggtgtaaagaggttgaagggagcttttaaaatgaaaggaggtatagaagaataaca |
30819741 |
T |
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| Q |
117 |
tgaatttttagacttagtaaattagaattttaatac |
152 |
Q |
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| T |
30819740 |
tgaatttgtagagtgactaaattcaaattttaatac |
30819705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 30819716 - 30819646
Alignment:
| Q |
167 |
aaattttaatacttgaaattgtaac-ttgtaagttttggtgaattttgtcatttaaattttcaaaatagca |
236 |
Q |
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| T |
30819716 |
aaattttaatacttgaaattgtaactttgtaagggtcggtgaattttgctaattaaattttcaaaatagca |
30819646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 30814539 - 30814478
Alignment:
| Q |
18 |
aataaatgtgaagggaggattta-tttaacctgtacttaaagagtaggtgaagagaagttga |
78 |
Q |
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| T |
30814539 |
aataaatgtgaagggagaattgaatttaacttgtacttaaaaagtaggtgaagagaggttga |
30814478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 30814443 - 30814372
Alignment:
| Q |
166 |
aaaattttaatacttgaaattgtaactt-gtaagttttggtgaattttgtcatttaaattttcaaaatagca |
236 |
Q |
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| T |
30814443 |
aaaattttaaaacttaaaattgtaactttgtaatggtcggtgaattttatcatttaaaatttcaaaatagca |
30814372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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