View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2333_low_4 (Length: 221)
Name: NF2333_low_4
Description: NF2333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2333_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 11056118 - 11056230
Alignment:
| Q |
1 |
ggtggaaggtatttgcagtacaatatctatggtaacctctttgaggtttctagaaagtatgtccctcctattcgtcctgtcggtagaggtgcttatggta |
100 |
Q |
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| T |
11056118 |
ggtggaaggtatttgcagtacaatatctatggtaacctctttgaggtttctagaaagtatgttcctcctattcgtcctgtcggtagaggtgcttatggta |
11056217 |
T |
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| Q |
101 |
ttgtttggtaagc |
113 |
Q |
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||||||||||||| |
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| T |
11056218 |
ttgtttggtaagc |
11056230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 208
Target Start/End: Original strand, 11056297 - 11056326
Alignment:
| Q |
179 |
agtgtaaagggtagtttatggtattgtttg |
208 |
Q |
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| T |
11056297 |
agtgtaaagggtagtttatggtattgtttg |
11056326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 29769804 - 29769708
Alignment:
| Q |
16 |
cagtacaatatctatggtaacctctttgaggtttctagaaagtatgtccctcctattcgtcctgtcggtagaggtgcttatggtattgtttggtaag |
112 |
Q |
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|||||||||||||||||||| | ||||| || |||| |||||||||||||||||||||||| | || ||||| |||||||||||||| ||||||| |
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| T |
29769804 |
cagtacaatatctatggtaatttatttgaagtgtctaacaagtatgtccctcctattcgtcctattggaagaggagcttatggtattgtctggtaag |
29769708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 29769218 - 29769164
Alignment:
| Q |
58 |
tatgtccctcctattcgtcctgtcggtagaggtgcttatggtattgtttggtaag |
112 |
Q |
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|||||||||||||||||| |||| || ||||| |||||||||||| | ||||||| |
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| T |
29769218 |
tatgtccctcctattcgttctgttggaagaggagcttatggtattttctggtaag |
29769164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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