View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2334_high_1 (Length: 542)
Name: NF2334_high_1
Description: NF2334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2334_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 14 - 531
Target Start/End: Original strand, 56492219 - 56492736
Alignment:
| Q |
14 |
gaaacaacaacataatatttgatttggtgtttggtttccatgctatgccatgccatgaatgcgatgaggggtgtaagtgttggtgtgtttccttgtaatg |
113 |
Q |
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| T |
56492219 |
gaaacaacaacataatatttgatttggtgtttggtttccatgctatgccatgccatgaatgcgatgaggggtgtaagtgttggtgtgtttccttgtaatg |
56492318 |
T |
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| Q |
114 |
taatgagagtgagaagatactgttcaagaattgatgatgatgatcatcatagtcatagtaatgggaggattaggaaaggtggggttgtggtgcgaaacag |
213 |
Q |
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| T |
56492319 |
taatgagagtgagaaaatactgttcaagaattgatgatgatcatcatcatagtcatagtaatgggaggattaggaaaggtggggttgtggtgcgaaacag |
56492418 |
T |
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| Q |
214 |
cagcaacaaagtagatgaaacagaaacagatgtaattgtgattgggagtggtattggtggactgagttgtgcagcactgttggcaagatatgaacaagat |
313 |
Q |
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| T |
56492419 |
cagcaacaaagtagatgaaacagaaacagatgtaattgtgattgggagtggtattggtggactgagttgtgcagcactgttggcaagatatgaacaagat |
56492518 |
T |
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| Q |
314 |
gttgtcgttttcgaaagccacgaccatgctggaggtgctgctcattcttttgatgtcaaaggctataagtttgattccggtccatcattattctctggtt |
413 |
Q |
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| T |
56492519 |
gttgtcgttttcgaaagccacgaccatgctggaggtgctgctcattcttttgatgtcaaaggctataagtttgattccggtccatcattattctctggtt |
56492618 |
T |
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| Q |
414 |
tgcagtcaagaggtccacaggctaaccctcttgctcaagttcttgatgctttgggagagtccgtcccctgcgctacttatgattcatggatggtccatgt |
513 |
Q |
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| T |
56492619 |
tgcagtcaagaggtccacaggctaaccctcttgctcaagttcttgatgctttgggagagtccgtcccctgcgctacttatgattcatggatggtccatgt |
56492718 |
T |
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| Q |
514 |
acctgaagctgatttctt |
531 |
Q |
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| T |
56492719 |
acctgaagctgatttctt |
56492736 |
T |
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