View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2334_high_10 (Length: 237)
Name: NF2334_high_10
Description: NF2334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2334_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 27603773 - 27603954
Alignment:
| Q |
1 |
ttttaagcgtgttctctcattccatgtcttaggtcattcaccttggctgcctccccaggacatcttcccgattttaaaatgttggctctgtgtggatgtg |
100 |
Q |
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| T |
27603773 |
ttttaagcttgttctctctttccatgtcataggtcaatcaccttggctgcacccccagggcatcttcccgattttaaaatgttggctctgtttggatgtg |
27603872 |
T |
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| Q |
101 |
tggtgtttcttttgagaggtgctgggtgtactattaatgatctcattgatcgggatattgatacaaaggtaaatgtcattgc |
182 |
Q |
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| T |
27603873 |
gggcttttcttttgagaggtgctgggtgtactattaatgatctcattgatcgggatattgatacaaaggtaaatgtcattgc |
27603954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 27604397 - 27604433
Alignment:
| Q |
191 |
ggttgctgtcttttttgtgtatattgttattcctatg |
227 |
Q |
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| T |
27604397 |
ggttgctgtcttttttgtgtttattgttattcctatg |
27604433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 52210560 - 52210382
Alignment:
| Q |
1 |
ttttaagcgtgttctctcattccatgtcttaggtcattcaccttggctgcctccccaggacatcttcccgattttaaaatgttggctctgtgtggatgtg |
100 |
Q |
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| T |
52210560 |
ttttaagcttgttctctctttccatgtcataggtcaatcaccttggctgcacccccagggcatcttcccgattttaaaatgttggctctgtttggatgcg |
52210461 |
T |
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| Q |
101 |
tggtgtttcttttgagaggtgctgggtgtactattaatgatctcattgatcgggatattgatacaaaggtaaatgtcattgc |
182 |
Q |
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| T |
52210460 |
gggcttttcttttgagaggtgctgggtg---tattaatgttctcattgatcgggatattgatacaaaggtaaatgtcattgc |
52210382 |
T |
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