View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2334_high_2 (Length: 511)
Name: NF2334_high_2
Description: NF2334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2334_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 2895844 - 2895456
Alignment:
| Q |
1 |
cttctatagagaaagagctgctggcatgtattctgccttaccctatgcatttgcacaggtaataaaatcaccatttttacaaattaagtatttgtacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2895844 |
cttctatagagaaagagctgctggaatgtattctgccttaccctatgcatttgcacaggtaataaaatcaccatttttacaaattaagtatttgtacaag |
2895745 |
T |
|
| Q |
101 |
tatttatatccatgagatgttatctaagtaggaatgtgaacctataatgatcattgttagtactaagaaagaacacaagatttgatcacagagtttggtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2895744 |
tatttatatccatgagatgttatctaaataggaatgtgaacctataatgatcattattagtactaagaaagaacacaagatttgatca--gagtttggtc |
2895647 |
T |
|
| Q |
201 |
aattgtgcctacggctccgactgcatggttgcaatgattttctattgttttagcttagggttaaaaattacaacttgtgtttaaataatacagtatagtg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2895646 |
aattgtgtctacggctccgactgcatggttgcaatgattttctattgttttagcttagggttaaaaattacaacttgcgtttaaataatacagtatagtg |
2895547 |
T |
|
| Q |
301 |
tacaagattatccctatgccatacctgtggttgttgggggaaacagcgagtgacttttccatttatcagcgaactatgagccatacaaaac |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2895546 |
tacaagattatccctatgccatacctgtggttgttgggggcaacagcgagtgacttttccatttatcagcgaactatgagccatacaaaac |
2895456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 387 - 498
Target Start/End: Complemental strand, 2893196 - 2893085
Alignment:
| Q |
387 |
aaaacaatcctaaaggataatatgaaatatatgttataatcaatatctcaacagtactatgctttgcataattactcatgttaataggaatcactctatt |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2893196 |
aaaacaatcctaaaggataatatgaaatatatgttataatcaatatctcaacagtactatgctttgcataattactcatgttaatagaaatcactctatt |
2893097 |
T |
|
| Q |
487 |
ttgtcacaggtt |
498 |
Q |
| |
|
||||| |||||| |
|
|
| T |
2893096 |
ttgtcgcaggtt |
2893085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 2879065 - 2879136
Alignment:
| Q |
5 |
tatagagaaagagctgctggcatgtattctgccttaccctatgcatttgcacaggtaataaaatcaccattt |
76 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
2879065 |
tatagagaaagagctgctggaatgtattctgccttaccctatgcacttgcacaggtaataaaatcactattt |
2879136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 2888530 - 2888689
Alignment:
| Q |
2 |
ttctatagagaaagagctgctggcatgtattctgccttaccctatgcatttgcacaggtaataaaatcaccatttttacaaattaagta-tttgtacaag |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| | ||||| || |||||| ||| | ||| |
|
|
| T |
2888530 |
ttctatagagaaagagctgctgggatgtattctgccttaccttatgcatttgcacaggtaat-aaatca-aaattttatgaaataagtattttttttaag |
2888627 |
T |
|
| Q |
101 |
tatttatatccat--gagatgttatctaagtaggaatgtgaacctataatgatcattgttag |
160 |
Q |
| |
|
|||||||| ||| ||||||| |||||| ||||||||||| ||||| |||||| ||||||| |
|
|
| T |
2888628 |
catttatatacataagagatgtaatctaaataggaatgtgatcctatcatgatccttgttag |
2888689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 2888800 - 2888861
Alignment:
| Q |
230 |
tgcaatgattttctattgttttagcttagggttaaaaattacaacttgtgtttaaataatac |
291 |
Q |
| |
|
||||||||||||||||| || ||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
2888800 |
tgcaatgattttctattattcaagcttagagttacagattacaacttgtgtttaaataatac |
2888861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 44232575 - 44232518
Alignment:
| Q |
5 |
tatagagaaagagctgctggcatgtattctgccttaccctatgcatttgcacaggtaa |
62 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
44232575 |
tatagagaaaaagctgctggaatgtactctgccttaccctatgcattttcacaggtaa |
44232518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 44209542 - 44209486
Alignment:
| Q |
6 |
atagagaaagagctgctggcatgtattctgccttaccctatgcatttgcacaggtaa |
62 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
44209542 |
atagagaaaaagctgctggaatgtactctgccttaccctatgcattttcacaggtaa |
44209486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 44221745 - 44221700
Alignment:
| Q |
17 |
gctgctggcatgtattctgccttaccctatgcatttgcacaggtaa |
62 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
44221745 |
gctgctggaatgtattctgccttaccatatgcattttcacaggtaa |
44221700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 43455687 - 43455647
Alignment:
| Q |
2 |
ttctatagagaaagagctgctggcatgtattctgccttacc |
42 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| ||||| |
|
|
| T |
43455687 |
ttctatcgagaaagagctgctggaatgtattctgctttacc |
43455647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 30901886 - 30901844
Alignment:
| Q |
180 |
atttgatcacagagtttggtcaattgtgcctacggctccgact |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
30901886 |
atttgatcacagagttcggtcaattgtgtctacgtctccgact |
30901844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 4503026 - 4503086
Alignment:
| Q |
2 |
ttctatagagaaagagctgctggcatgtattctgccttaccctatgcatttgcacaggtaa |
62 |
Q |
| |
|
||||||||||||||||||||||| |||||| || | || || ||||| || |||||||||| |
|
|
| T |
4503026 |
ttctatagagaaagagctgctggaatgtatgctcctttgccttatgccttagcacaggtaa |
4503086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University