View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2334_high_4 (Length: 371)
Name: NF2334_high_4
Description: NF2334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2334_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 41015947 - 41015602
Alignment:
| Q |
18 |
gtagatggtgacagcaataatgaagaaatcgatgaagttagtgaatcttcgaataagagaaagaggaccgaaaagttatcagctataagtgatcttctgg |
117 |
Q |
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| T |
41015947 |
gtagatggtgacagcaataatgaagaaatcgatgaagttagtgaatcttcgaataagagaaagaggaccgaaaagttatcagctataagtgatcttctgg |
41015848 |
T |
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| Q |
118 |
acaaaattaacaaagcccgaagtgaggaggatttgcagtcatgcttggaggtgaagttacagcttttcaattcagacgaagactctgctatggtgcaaca |
217 |
Q |
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| T |
41015847 |
acaaaattaacaaagcccgaagtgaggaggatttgcagtcatgcttggaggtgaagttacagcttttcaattcagacgaagactctgctatggtgcaaca |
41015748 |
T |
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| Q |
218 |
cacagacaatgaaatgcatcagaatcaaactgctgaaggcgatgctgtaccagcaaaagaattggattattcgttaccaaaattggttgggtcctctgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41015747 |
cacagacaatgaaatgcatcagaatcaaactgctgaaggcgatgctgtaccagcaaaagaattggattattcgttaccaaaattggttgggtcctctgaa |
41015648 |
T |
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| Q |
318 |
attgatcaagaaactctcaacatcattgacaaacacttttcttctc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41015647 |
attgatcaagaaactctcaacatcattgacaaacacttttcttctc |
41015602 |
T |
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