View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2334_high_7 (Length: 238)
Name: NF2334_high_7
Description: NF2334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2334_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 42640829 - 42641034
Alignment:
| Q |
15 |
cacagacatgaatactccataattcaacacggaatagaaagttgaggtaccttctcagcttgaactacaaccataagacgaccgagtatctcttgatcag |
114 |
Q |
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| T |
42640829 |
cacagacatgaatactccataattcaacacggaatagaaagttgaggtaccttctcagcttgaactacaaccataagacgaccgagtatctcttgatcag |
42640928 |
T |
|
| Q |
115 |
acaatcgcgaaaatcgcacaatggcacacctactctgaatcggctcaataatcttagaagatgtattgcaagcaagcgcaaaacgagtagaattagaata |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42640929 |
acaatcgcgaaaatcgcacaatggcacacctactctgaatcggctcaataatcttagaagatgtattgcaagcaagcgcgaaacgagtagaattagaata |
42641028 |
T |
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| Q |
215 |
tatctc |
220 |
Q |
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|||||| |
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| T |
42641029 |
tatctc |
42641034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 42565395 - 42565191
Alignment:
| Q |
16 |
acagacatgaatactccataattcaacacggaatagaaagttgaggtaccttctcagcttgaactacaaccataagacgaccgagtatctcttgatcaga |
115 |
Q |
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||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42565395 |
acagacatgaatacttcgtaattcaacacagaatagaaagttgaggtaccttctcagcttgaaccacaaccataagacgaccgagtatctcttgatcaga |
42565296 |
T |
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| Q |
116 |
caatcgcgaaaatcgcacaatggcacacctactctgaatcggctcaataatcttagaagatgtattgcaagcaagcgcaaaacgagtagaattagaatat |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||| |
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| T |
42565295 |
caatcgtgaaaatcgcacaatggcacacctactctgaattggctcaataatcttagaagatgtattggaagcaagcgcgaaatgggtagaattagaatat |
42565196 |
T |
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| Q |
216 |
atctc |
220 |
Q |
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||||| |
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| T |
42565195 |
atctc |
42565191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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