View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2334_high_8 (Length: 238)
Name: NF2334_high_8
Description: NF2334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2334_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37748297 - 37748077
Alignment:
| Q |
1 |
ttcagtcatgtgaggaaaaagtgactgagttagcacaagaaggtgttgattttatgcgtggaattgatggcatattgaggttatcaaagtgtgttcaagg |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37748297 |
ttcagtcatatgaggaaaaagtgaccgagttagcacaagaaggtgttgattttatgcgtggaattgatggcatattcaggttatcaaagtgtgttcaagg |
37748198 |
T |
|
| Q |
101 |
aataaggattggagcagaaagttcagttttctacaatagttagaagcaagagatgctgattcacattcattatcagaagcacaagtagattctgaagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37748197 |
aataaggattggagcagaaagttcagttttctacaatagttagaagcaagagatgctgattcacattcattatcagaagcacaagtagattctgaagaat |
37748098 |
T |
|
| Q |
201 |
caagctagtagcagtatgaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37748097 |
caagctagtagcagtatgaat |
37748077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 43040974 - 43041091
Alignment:
| Q |
104 |
aaggattggagcagaaagttcagttttctacaatagttagaagcaagagatgctgattcacattcattatcagaagcacaagtagattctgaagaatcaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
43040974 |
aaggattggagcagaaagttcagttttctacaatagttagaagcaagagatgctgattcacaatcattatcagaagcacaagtagattatgaagaatcta |
43041073 |
T |
|
| Q |
204 |
gctagtagcagtatgaat |
221 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
43041074 |
gctagtagcagtatgaat |
43041091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 14196461 - 14196575
Alignment:
| Q |
104 |
aaggattggagcagaaagttcagttttctacaatagttagaagcaagagatgctgattcacattcattatcagaagcacaagtagattctgaagaatcaa |
203 |
Q |
| |
|
|||||||||| || ||||||| ||| |||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
14196461 |
aaggattggaacaaaaagttctatttactacaataattagaagcaagagatgctgattcaaattcattgtcagatgcacaagtagattctggagaatcaa |
14196560 |
T |
|
| Q |
204 |
gctagtagcagtatg |
218 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14196561 |
gctagtagcagtatg |
14196575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 43040540 - 43040638
Alignment:
| Q |
1 |
ttcagtcatgtgaggaaaaagtgactgagttagcacaagaaggtgttgattttatgcgtggaattgatggcatattgaggttatcaaagtgtgttcaag |
99 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||| |||||||| |
|
|
| T |
43040540 |
ttcagtcatatgaggaaaaagtgactgagttagcacaagaaggtgttgaatttatgcgtggaattgttgacatattcaggttatcaaagtttgttcaag |
43040638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 13108104 - 13108021
Alignment:
| Q |
11 |
tgaggaaaaagtgactgagttagcacaagaaggtgttgattttatgcgtggaattgatggcatattgaggttatcaaagtgtgt |
94 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||||| | |||||| || |||||||| |||||| | ||||||||||||||| |
|
|
| T |
13108104 |
tgaggaaacaatgactaagttagcacaagaaggtgttgttgttatgcatgaaattgatgacatattcaagttatcaaagtgtgt |
13108021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University