View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2334_low_10 (Length: 237)
Name: NF2334_low_10
Description: NF2334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2334_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 49821402 - 49821577
Alignment:
| Q |
1 |
ttttcaacaactccggtttgaagaacttcattgctcnnnnnnnnn--gctttctttaagaatacctattgtgaacgaagtgctcgcattcttgcatattg |
98 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49821402 |
ttttcaacaactccggtttgaagaacttcattgctctttttttttttgctttctttaagaatacctattgtgaacgaagtgctcgcattcttgcatattg |
49821501 |
T |
|
| Q |
99 |
catgatgtttggaaattggagatatacttatggaggatatttggtgtttagtatcttattgagttcgaaaggtgtg |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49821502 |
catgatgtttggaaattggagatatacttatggaggatatttggtgtttagtatcttattgagttcgaaaggtgtg |
49821577 |
T |
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