View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2334_low_13 (Length: 226)
Name: NF2334_low_13
Description: NF2334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2334_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27603400 - 27603181
Alignment:
| Q |
1 |
caagagatgtcccctctactactcacattgctactactctgattcttgttttccttatcttgtcctaatctcgaaggcgacgtagagatgtgcacaacaa |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27603400 |
caagagatgtcccctccactactcacattgctactactctgattcttgttttccttatcttgtcctaatctcgaaggcgaggtagagatgtgcacaacaa |
27603301 |
T |
|
| Q |
101 |
gttggaaatttgagagtgacccaacacttctacaaaattcaagattataaatcccaaattgggatggcttgaatggactgactgaaacattaggactggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27603300 |
gttggaaatttgagagtgacccaacacttctacaaaattcaagattataaatcacaaattgggatggcttgaatggactgactgaaacattaggactggg |
27603201 |
T |
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| Q |
201 |
gtatcggtctacacactgtt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
27603200 |
gtatcggtctacacactgtt |
27603181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 52210954 - 52211155
Alignment:
| Q |
1 |
caagagatgtcccctctactactcacattgctactactctgattcttgttttccttatcttgtcctaatctcgaaggcgacgtagagatgtgcacaacaa |
100 |
Q |
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|||||||||||| || |||||||||||||| |||| || |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
52210954 |
caagagatgtcctctacactactcacattgcaactattcgcattcttgttttccttatcatttcctaatctcgaaggcgacgtagagatgtgcacaacaa |
52211053 |
T |
|
| Q |
101 |
gttggaaatttgagagtgacccaacacttctacaaaattcaagattataaatcccaaattgggatggcttgaatggactgactgaaacattaggactggg |
200 |
Q |
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||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
52211054 |
gttggaaatttgagagtgagccaacacttttacaattttcaagattataaaccccaaattgggatggcttgaatggactgactgaaacattagaaccggg |
52211153 |
T |
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| Q |
201 |
gt |
202 |
Q |
| |
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|| |
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| T |
52211154 |
gt |
52211155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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