View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2334_low_3 (Length: 438)
Name: NF2334_low_3
Description: NF2334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2334_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 250 - 399
Target Start/End: Original strand, 47140299 - 47140448
Alignment:
| Q |
250 |
ttaggtcatactcatacagaatgcaataagaccaataaaggatggatacgatctgtagaaagctttcatttcatgagtcccaataaaggacgttgtttta |
349 |
Q |
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| T |
47140299 |
ttaggtcatactcatacagaatgcaataagaccaataaaggatggatacgatctgtagaaagctttcatttcatgagtcccaataaaggactttgtttta |
47140398 |
T |
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| Q |
350 |
tttttctgttccgattgaaatttgaaatccaataaatcatccactagatc |
399 |
Q |
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| T |
47140399 |
tttttctgttccgattgaaatttgaaatccaataaatcatccactagatc |
47140448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 47140016 - 47140133
Alignment:
| Q |
1 |
atctttagagatatcaagatattggtggagggtatttcgagtaaacttaatcacacgtcagagtttagtgcaattctaattacttatagaataagtttca |
100 |
Q |
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| T |
47140016 |
atctttagagatatcaagatattggtggagggtatttcgagtaaacttaatcacacgtcagagtttagtgcaattctaattacttatagaataagtttca |
47140115 |
T |
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| Q |
101 |
tccgatcgtaagttaata |
118 |
Q |
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| T |
47140116 |
tccgatcgtaagataata |
47140133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 47140173 - 47140278
Alignment:
| Q |
116 |
atacttttatttacattccttgtattatgattactttgtttctgtataaaaaatcgtttttaggaaatactgcaatgttaatttataaacttcaggttca |
215 |
Q |
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| T |
47140173 |
atacttttatttacattccttgtattatgattactttgtttctgtataaaaaatcgttttaaggaaataatgcaatgttaatttataaacttcaggttca |
47140272 |
T |
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| Q |
216 |
agatgt |
221 |
Q |
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| T |
47140273 |
agatgt |
47140278 |
T |
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