View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2334_low_6 (Length: 284)
Name: NF2334_low_6
Description: NF2334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2334_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 15575029 - 15574759
Alignment:
| Q |
1 |
gaaaagtcattcatactcattcatggcagtagttggaataaggcacgttgtttcaactttactagagttggaatatatgaaagaagtatctatcacttgc |
100 |
Q |
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| T |
15575029 |
gaaaagtgattcatactcattcatggcagtagttggaataaggcatgttgtttcaactttactagagttggaacatatgaaagaagtatctatcacttgc |
15574930 |
T |
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| Q |
101 |
atcttctacaacagaaaagttgttcagtaattcaaagtaggatttgttcttgacaaccacgatactcatttg-ttaatcttattttagtaaaacattttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
15574929 |
atcttctacaacagaaaagttgttcagtaattcaaagtaggatttgttcttgacaaccacgatactcatttgataaatcttattttagtaaaacattttc |
15574830 |
T |
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| Q |
200 |
catttaataagttttttatcaggttatttggatgatgtatcattgtaatttgatgagctattggggtgcat |
270 |
Q |
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| T |
15574829 |
catttaataagttttttatcaggttatttggatgatgtatcattgtaatttgatgagctattggggtgcat |
15574759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 8339448 - 8339525
Alignment:
| Q |
12 |
catactcattcatggcagtagttggaataaggcacgttgtttcaactttactagagttggaatatatgaaagaagtat |
89 |
Q |
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| T |
8339448 |
catactcattcatgtcggtagttgcaataagttttgtagtttcaactttactagagttggaacacatgaaagaagtat |
8339525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 8339757 - 8339791
Alignment:
| Q |
220 |
aggttatttggatgatgtatcattgtaatttgatg |
254 |
Q |
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| T |
8339757 |
aggttatttggatgatatatcattgtaatttgatg |
8339791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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