View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2335_high_11 (Length: 383)

Name: NF2335_high_11
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2335_high_11
NF2335_high_11
[»] chr3 (17 HSPs)
chr3 (18-368)||(2441110-2441460)
chr3 (134-239)||(988652-988757)
chr3 (129-236)||(996806-996913)
chr3 (129-236)||(1013196-1013303)
chr3 (98-219)||(37758440-37758561)
chr3 (140-199)||(1891797-1891856)
chr3 (147-236)||(2679149-2679238)
chr3 (147-236)||(2687056-2687145)
chr3 (140-237)||(2697457-2697554)
chr3 (128-237)||(13478852-13478961)
chr3 (129-209)||(2651150-2651230)
chr3 (122-185)||(2458617-2458680)
chr3 (126-192)||(803979-804045)
chr3 (96-222)||(13525782-13525908)
chr3 (130-262)||(1003726-1003858)
chr3 (130-262)||(1021723-1021855)
chr3 (128-192)||(3745201-3745265)
[»] chr4 (2 HSPs)
chr4 (129-237)||(22672849-22672957)
chr4 (125-238)||(20020499-20020612)
[»] chr5 (4 HSPs)
chr5 (130-239)||(1428462-1428571)
chr5 (182-234)||(20305160-20305212)
chr5 (182-234)||(20309564-20309616)
chr5 (182-234)||(20292300-20292352)
[»] chr1 (2 HSPs)
chr1 (98-185)||(51382209-51382296)
chr1 (99-193)||(23896906-23897000)
[»] chr6 (1 HSPs)
chr6 (119-236)||(24418152-24418269)


Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 2441110 - 2441460
Alignment:
Q  18 ccattaacaagcagctcttgtgtgtcctccctaccttaagctcttctggccattcactttacgacccgccacttcctacgcttccgtttgatttggtggc 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2441110 ccattaacaagcagttcttgtgtgtcctccctaccttaagctcttctggccattcactttatgacccgccacttcctacgcttccgtttgatttggtggc 2441209  T
Q  118 agagatcctgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2441210 agagatcctgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcgccaagaag 2441309  T
Q  218 cacctcagcttgtcaaccacacgctatcttcactgcgtaagctacactgggttcccctatctgtacgttctcaagtcttacccactcgggcccgttctca 317  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2441310 cacctcagcttgtcaaccacacgctgccttcactgcgtaagctacactgggttcccctatctgtacgttctcaagtcttacccactcgggcccgttctca 2441409  T
Q  318 acaacttaaccaccaacatcacagagtatgagtattctccgtataatattc 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2441410 acaacttaaccaccaacatcacagagtatgagtattctccgtataatattc 2441460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 988652 - 988757
Alignment:
Q  134 ctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaa 233  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||| | |||| ||||||| | || |||||||| ||| ||||||    
T  988652 ctacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaatctctgatcccaaattcgcaaaaaagcaccttagcctgtcaa 988751  T
Q  234 ccacac 239  Q
    ||||||    
T  988752 ccacac 988757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 996806 - 996913
Alignment:
Q  129 gtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagctt 228  Q
    |||||||||| |||||||||||||| ||||||||||||  ||||||||| |||| |||| ||||| |  ||| ||||||  | ||||||||||| ||| |    
T  996806 gtaggctacccgtgaagctcctcctccagctccgatgcgcctgcaagtcctggagttctctaatctctaatcccaaatttgctaagaagcaccttagcat 996905  T
Q  229 gtcaacca 236  Q
    ||||||||    
T  996906 gtcaacca 996913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 1013196 - 1013303
Alignment:
Q  129 gtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagctt 228  Q
    |||||||||| |||||||||||||| ||||||||||||  ||||||||| |||| |||| ||||| |  ||| ||||||  | ||||||||||| ||| |    
T  1013196 gtaggctacccgtgaagctcctcctccagctccgatgcgcctgcaagtcctggagttctctaatctctaatcccaaatttgctaagaagcaccttagcat 1013295  T
Q  229 gtcaacca 236  Q
    ||||||||    
T  1013296 gtcaacca 1013303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 37758561 - 37758440
Alignment:
Q  98 cttccgtttgatttggtggcagagatcctgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccg 197  Q
    ||||| || |||||||||||||| || || |||||||| ||||| ||| | ||| | || ||||||||| |||||||||| | |||||||||||||   |    
T  37758561 cttcctttcgatttggtggcagaaattctatgtaggcttcctgtcaagttactcttacaactccgatgcctctgcaagtccttgaattctttaatcttgg 37758462  T
Q  198 atcacaaattcaccaagaagca 219  Q
    ||| ||||||| | ||||||||    
T  37758461 atcccaaattcgctaagaagca 37758440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 1891856 - 1891797
Alignment:
Q  140 gtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgat 199  Q
    ||||||||||||||||| |||||||   |||||||||||||||||||| ||||| |||||    
T  1891856 gtgaagctcctccttcaactccgatctgtctgcaagtcatggaattctctaatctccgat 1891797  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 2679238 - 2679149
Alignment:
Q  147 tcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaacca 236  Q
    |||||||||| ||||||||  |||||||||||||||| ||| | ||| ||||||  |||||  | ||||||||||| ||| |||||||||    
T  2679238 tcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagcgtgtcaacca 2679149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 2687145 - 2687056
Alignment:
Q  147 tcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaacca 236  Q
    |||||||||| ||||||||  |||||||||||||||| ||| | ||| ||||||  |||||  | ||||||||||| || ||||||||||    
T  2687145 tcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagattgtcaacca 2687056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 2697554 - 2697457
Alignment:
Q  140 gtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaaccac 237  Q
    |||||| | ||||| || || |||||| |||| ||||||||||||||| ||||||| |||  ||  || |||||||||||||| ||| ||||||||||    
T  2697554 gtgaagttactcctacaacttcgatgcgtctgtaagtcatggaattctctaatcactgataccagttttaccaagaagcaccttagcatgtcaaccac 2697457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 13478852 - 13478961
Alignment:
Q  128 tgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagct 227  Q
    ||||||||||| ||||||||||||||||| || |||||  || | ||||  ||||||||||| ||||| |||| ||||||  |||| ||||| ||  ||     
T  13478852 tgtaggctacccgtgaagctcctccttcaacttcgatgtgtcagtaagttgtggaattcttttatcactgatcgcaaatttgccaacaagcatcttcgca 13478951  T
Q  228 tgtcaaccac 237  Q
    ||||||||||    
T  13478952 tgtcaaccac 13478961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 2651230 - 2651150
Alignment:
Q  129 gtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattca 209  Q
    ||||| |||| || ||||||||| |||| || |||||  |||||||| ||||||||||| | ||| |||||||||||||||    
T  2651230 gtaggttaccggtaaagctcctctttcaacttcgatgtgtctgcaagccatggaattctcttatctccgatcacaaattca 2651150  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 2458617 - 2458680
Alignment:
Q  122 atcctgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaatt 185  Q
    |||||| | |||||||| ||||||||||||||||| || || ||||| |||||||| |||||||    
T  2458617 atcctgggcaggctaccagtgaagctcctccttcaacttcgttgcttatgcaagtcgtggaatt 2458680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 804045 - 803979
Alignment:
Q  126 tgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaat 192  Q
    ||||| || ||||||||||| || | ||||| ||||||||| | |||||||||||||||||| ||||    
T  804045 tgtgttggttacctgtgaagttcttacttcaactccgatgcgtttgcaagtcatggaattctctaat 803979  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 13525782 - 13525908
Alignment:
Q  96 cgcttccgtttgatttggtggcagagatcctgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcac 195  Q
    ||||||| |||||||||||| ||||||| || |||||||| ||||||||    ||| | ||  |||||||| | ||||| || ||||| || || ||| |    
T  13525782 cgcttccctttgatttggtgccagagattctttgtaggcttcctgtgaaatcactcttgcaattccgatgcgtatgcaaatcctggaaatcattgatctc 13525881  T
Q  196 cgatcacaaattcaccaagaagcacct 222  Q
     |||| ||||||| |||||||||||||    
T  13525882 tgatcccaaattcgccaagaagcacct 13525908  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 1003726 - 1003858
Alignment:
Q  130 taggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttg 229  Q
    |||| |||| ||||||||||||||||| || ||||||   |||||||||||||||| | ||||| || ||  ||||||    ||||||||||| ||  |     
T  1003726 taggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaatctccaataccaaatttcataagaagcaccttagtctt 1003825  T
Q  230 tcaaccacacgctatcttcactgcgtaagctac 262  Q
    |||||||||| |   |||||||| |||||||||    
T  1003826 tcaaccacacacacccttcactgtgtaagctac 1003858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 1021723 - 1021855
Alignment:
Q  130 taggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttg 229  Q
    |||| |||| ||||||||||||||||| || ||||||   |||||||||||||||| | ||||| || ||  ||||||    ||||||||||| ||  |     
T  1021723 taggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaatctccaataccaaatttcataagaagcaccttagtctt 1021822  T
Q  230 tcaaccacacgctatcttcactgcgtaagctac 262  Q
    |||||||||| |   |||||||| |||||||||    
T  1021823 tcaaccacacacacccttcactgtgtaagctac 1021855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 3745201 - 3745265
Alignment:
Q  128 tgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaat 192  Q
    ||||||||||| |||||| || |||||||  |||||||  | |||||||||||||||||| ||||    
T  3745201 tgtaggctaccggtgaagttcatccttcaattccgatgtgtttgcaagtcatggaattctctaat 3745265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 22672957 - 22672849
Alignment:
Q  129 gtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagctt 228  Q
    ||||| |||| |||||||||||||||||||||| ||||  ||||||||||||||||||| ||||| | |||| ||||||| | ||||||||||| ||| |    
T  22672957 gtaggttaccggtgaagctcctccttcagctccaatgcgcctgcaagtcatggaattctctaatctctgatcgcaaattcgctaagaagcaccttagcct 22672858  T
Q  229 gtcaaccac 237  Q
    |||||||||    
T  22672857 gtcaaccac 22672849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 20020612 - 20020499
Alignment:
Q  125 ctgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctca 224  Q
    ||||||||| |||| ||||||||||||||||| || |||||  | || || |||||||||||| | ||| |  |||  |||||  |||||||||||||      
T  20020612 ctgtgtaggttaccagtgaagctcctccttcaacttcgatgtgtatgtaattcatggaattctctcatctctcatcctaaattttccaagaagcaccttc 20020513  T
Q  225 gcttgtcaaccaca 238  Q
    || |||||||||||    
T  20020512 gcatgtcaaccaca 20020499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 1428571 - 1428462
Alignment:
Q  130 taggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttg 229  Q
    ||||||||| ||||| ||||||||||| ||||||||| | |||||| |||| |||||| ||||||| |||| ||||||| |||||||||| || ||| ||    
T  1428571 taggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatgtaattctctaatcactgatctcaaattcgccaagaagcaacttagcatg 1428472  T
Q  230 tcaaccacac 239  Q
    ||||||||||    
T  1428471 tcaaccacac 1428462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 20305160 - 20305212
Alignment:
Q  182 aattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaac 234  Q
    |||||| |||||||||||| ||||||| |||||||||||||  ||||||||||    
T  20305160 aattctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaac 20305212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 20309564 - 20309616
Alignment:
Q  182 aattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaac 234  Q
    |||||| |||||||||||| ||||||| |||||||||||||  ||||||||||    
T  20309564 aattctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaac 20309616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 20292300 - 20292352
Alignment:
Q  182 aattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaac 234  Q
    |||||| |||||||| ||| ||||||| |||||||||||||  ||||||||||    
T  20292300 aattctctaatcaccaatcccaaattcgccaagaagcaccttcgcttgtcaac 20292352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 51382296 - 51382209
Alignment:
Q  98 cttccgtttgatttggtggcagagatcctgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaatt 185  Q
    |||||||| ||| |||||||||| ||||||||   ||| || ||||| | ||||||||| ||||| ||| ||||||||||||||||||    
T  51382296 cttccgttcgatctggtggcagaaatcctgtgcctgctccccgtgaaacacctccttcaactccgttgcgtctgcaagtcatggaatt 51382209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 23897000 - 23896906
Alignment:
Q  99 ttccgtttgatttggtggcagagatcctgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatc 193  Q
    ||||||||||| | ||||  || |||||||| || || ||||| ||| ||||||| ||  |||| ||| |||||||||||||||||||| |||||    
T  23897000 ttccgtttgatctcgtggttgaaatcctgtgcagactccctgtcaagttcctcctacaattccgctgcgtctgcaagtcatggaattctctaatc 23896906  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 24418269 - 24418152
Alignment:
Q  119 gagatcctgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagc 218  Q
    ||||| ||||||||||| || |||||| | |||||||| || || ||  |||||||||| |  ||||| |||||| | |||| ||||||| | || ||||    
T  24418269 gagattctgtgtaggcttcccgtgaagttactccttcaacttcgctgtctctgcaagtccttcaattcattaatctctgatcccaaattcgcaaacaagc 24418170  T
Q  219 acctcagcttgtcaacca 236  Q
    ||||  ||||||||||||    
T  24418169 accttcgcttgtcaacca 24418152  T

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