View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2335_high_13 (Length: 357)
Name: NF2335_high_13
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_high_13 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 150 - 357
Target Start/End: Complemental strand, 33319329 - 33319124
Alignment:
| Q |
150 |
ggggcaaattacattaacctcccctaaagttatcttaaataacacaaacacccccttatttttaaaatcaaactccaggaaactacctttgtttactagt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| |
|
|
| T |
33319329 |
ggggcaaattacattaacctcccctaaaattatcttaaataacacaaacacccccttatttttaaa-tcaaacac-aggaaactacctttgtttactagt |
33319232 |
T |
|
| Q |
250 |
cagaattggcgtctcctgtgcattgtacagaacctactattactaattcttttacatcatcaagtttatgacctttgagacgatctactagtctctctaa |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33319231 |
cagaattggcgtctcctgtgcattgtacagaacctactactactaattcttttacatcatcaagtttatgacctttgagacgatctactagtctctctaa |
33319132 |
T |
|
| Q |
350 |
tgcttctt |
357 |
Q |
| |
|
|||||||| |
|
|
| T |
33319131 |
tgcttctt |
33319124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 33319470 - 33319410
Alignment:
| Q |
9 |
aagcctttgaataaagtccatattagacgcctccaaaaaacaacaaataaatagtttatcg |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33319470 |
aagcctttgaataaagtccatattagacgcctccaaaaaacaacaaataaatagtttatcg |
33319410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 11768401 - 11768446
Alignment:
| Q |
152 |
ggcaaattacattaacctcccctaaagttatcttaaataacacaaa |
197 |
Q |
| |
|
|||||| |||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
11768401 |
ggcaaaatacactaacctcccctaaggttgtcttaaataacacaaa |
11768446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 27433055 - 27433004
Alignment:
| Q |
151 |
gggcaaattacattaacctcccctaaagttatcttaaataacacaaacaccc |
202 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
27433055 |
gggcaaattacactaacctcccgtaaggttttcttaaataacacaaacaccc |
27433004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 20291139 - 20291189
Alignment:
| Q |
155 |
aaattacattaacctcccctaaagttatcttaaataacacaaacaccccct |
205 |
Q |
| |
|
|||| ||| ||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
20291139 |
aaataacactaacctcccctgaggttttcttaaataacacaaacaccccct |
20291189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 11669611 - 11669659
Alignment:
| Q |
151 |
gggcaaattacattaacctcccctaaagttatcttaaataacacaaaca |
199 |
Q |
| |
|
|||||||||||| ||||||||| ||| || |||||||||||||||||| |
|
|
| T |
11669611 |
gggcaaattacactaacctcccataaggtcttcttaaataacacaaaca |
11669659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University