View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2335_high_16 (Length: 316)

Name: NF2335_high_16
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2335_high_16
NF2335_high_16
[»] chr1 (1 HSPs)
chr1 (1-302)||(1383037-1383335)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 1383037 - 1383335
Alignment:
Q  1 gctctgaattcaggatggattcgtgttccttgcggttctcttgagcaatctatagaaaaagcaatcaaaatagattatgttagtaaccagccagcatata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1383037 gctctgaattcaggatggattcgtgttccttgcggttctcttgagcaatctatagaaaaagcaatcaaaatagattatgttagtaaccagccagcatata 1383136  T
Q  101 tatgatcttttgcggcaggcttgcacacacacttgtaattaaattacattgaattatgcaattttctattatagcttacgatagtacacttgacaccaaa 200  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  1383137 tatgatcttttgcggcgggcgtgcacacacacttgtaattacattacattgaattatgcaattttctattataacttacgatagcacacttgacaccaaa 1383236  T
Q  201 ctgagagcctagctttcgaaagtcgtcagcagtgtgaaaggcaagtctcctagtttaagaagnnnnnnnnnnggttagttacgttaaatatgatgaatga 300  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||    
T  1383237 ctgagagcctaggtttcgaaagtcgtcagcagtgtgaaaggcaagtctcctagtttaagaa---aaaaaaaaggttagttacgttaaatatgatgaatga 1383333  T

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