View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_high_17 (Length: 308)
Name: NF2335_high_17
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 49 - 298
Target Start/End: Complemental strand, 12871617 - 12871368
Alignment:
| Q |
49 |
taacgaaataatatagttcagacatgaattgtgacgtggagttgactgtatctacccatatatttcctagttttgccgaactgtaatatcaattgttcga |
148 |
Q |
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| T |
12871617 |
taacgaaacaatatagttcaaacatgaattgtgatgtggagttgactgtatctacccatatatttcctagttttgccgaactgtaatatcaattgtttga |
12871518 |
T |
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| Q |
149 |
tgaagaacatcaatattatcggctgggaattatcattcgcagcaaaatacttctgaactgtttttgcaaattcacccccaaaaagaacagtggattcttc |
248 |
Q |
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| T |
12871517 |
tgaagaacatcaatattatcggcagggaattatcattcgcagcaaaatacttctcaattgtttttgcaaattca-ccccaaaaagaacagtggattcttc |
12871419 |
T |
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| Q |
249 |
-tcccctgcaatgtttaatgatataatcaatatcaataaaaacttcttcat |
298 |
Q |
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| T |
12871418 |
ttcccctgcaatgtataatgatataatcaatatcaataaaaacttcttcat |
12871368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 154 - 298
Target Start/End: Complemental strand, 27766672 - 27766528
Alignment:
| Q |
154 |
aacatcaatattatcggctgggaattatcattcgcagcaaaatacttctgaactgtttttgcaaattcacccccaaaaagaacagtggattcttc-tccc |
252 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
27766672 |
aacatcaatattatcagttgggaattatcattcgcagcaaaatacttctcaattgtttttgcaaattca-ccccaaaaagaacattggattcttcttccc |
27766574 |
T |
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| Q |
253 |
ctgcaatgtttaatgatataatcaatatcaataaaaacttcttcat |
298 |
Q |
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| T |
27766573 |
ctgcaatgtataatgatataatcaatatcaataaaaacttcttcat |
27766528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 27768809 - 27768699
Alignment:
| Q |
48 |
ataacgaaataatatagttcagacatgaattgtgacgtggagttgactgtatctacccatatatttcctagttttgccgaactgtaatatcaattgttcg |
147 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27768809 |
ataacgaaacaatatagttcagacatgaattgtgatgtggagttgactgtatctactcatatatttcctagttttgccgaactgtaatatcaattgttcg |
27768710 |
T |
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| Q |
148 |
atgaagaacat |
158 |
Q |
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||||||||||| |
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| T |
27768709 |
atgaagaacat |
27768699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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