View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_high_18 (Length: 278)
Name: NF2335_high_18
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 46632774 - 46632955
Alignment:
| Q |
10 |
aagaatatatctgagttgtcctaaacctttaatcttgaatttatcatgaaggaaagacttacctgttggatctcattaaaatagttaattacctgttaag |
109 |
Q |
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| T |
46632774 |
aagaaaatatctgagttgtcctaaacctttaatcttgaatttatcacgaaggaaagacttacctgttggatctcattaaaatagttaattacctg-taag |
46632872 |
T |
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| Q |
110 |
tactatatcgtccacatagattatcaaggcagtaaagtgatagtaaaaagggaataatccaagagaaataagagaatcagaaa |
192 |
Q |
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| T |
46632873 |
tactatatcgtccacatagattatcaaggcagtaaagtgatagtaaaaagggaataatccaagagaaaaaagagaatcagaaa |
46632955 |
T |
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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 46632995 - 46633066
Alignment:
| Q |
190 |
aaatagatttatatattaagcttgcaacctttggttgaactagataagccacattaagaatgtgttggtatttt |
263 |
Q |
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| T |
46632995 |
aaatagatttatatattaaacttgcaaactttggttgaactagataagc--cattaagaatgtgttggtatttt |
46633066 |
T |
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