View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_high_23 (Length: 250)
Name: NF2335_high_23
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_high_23 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 34279234 - 34279313
Alignment:
| Q |
31 |
gtatttggcactataagaccaatcaagtagtctcacaaaagataacttctcaaatcatcactaatcttcacatctttcat |
110 |
Q |
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| T |
34279234 |
gtatttggcactatacgaccaatcaagtagtctcacaaaagataacttctcaaatcatcactaatcttcacatctttcat |
34279313 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 32267953 - 32267998
Alignment:
| Q |
191 |
tgtagggtcttgttaaccagtgccctcagaataatggtcaaggaaa |
236 |
Q |
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| T |
32267953 |
tgtagggtcttgctaaccagtgccctcaggataatggttaaggaaa |
32267998 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 12173285 - 12173244
Alignment:
| Q |
195 |
gggtcttgttaaccagtgccctcagaataatggtcaaggaaa |
236 |
Q |
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| T |
12173285 |
gggtcttgttaaccagtgccctcagggtaatggttaaggaaa |
12173244 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 32800352 - 32800295
Alignment:
| Q |
193 |
tagggtcttgttaaccagtgccctcagaataatggtcaaggaaattttaaatagaaaa |
250 |
Q |
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| T |
32800352 |
tagggtcttgttaacaagtgccctcatgacaatggttaaggaaactataaatagaaaa |
32800295 |
T |
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