View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2335_high_25 (Length: 250)

Name: NF2335_high_25
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2335_high_25
NF2335_high_25
[»] chr2 (5 HSPs)
chr2 (1-240)||(14816084-14816323)
chr2 (34-212)||(4259424-4259602)
chr2 (40-212)||(14462099-14462271)
chr2 (126-212)||(14128179-14128265)
chr2 (83-145)||(15089451-15089513)
[»] scaffold0001 (1 HSPs)
scaffold0001 (4-199)||(67793-67988)
[»] chr8 (2 HSPs)
chr8 (37-210)||(33468429-33468599)
chr8 (48-198)||(4780651-4780801)
[»] chr4 (3 HSPs)
chr4 (3-212)||(4049582-4049791)
chr4 (3-176)||(41973082-41973255)
chr4 (18-212)||(15993327-15993521)
[»] chr7 (3 HSPs)
chr7 (58-212)||(36713975-36714128)
chr7 (1-212)||(6650908-6651120)
chr7 (3-81)||(6066967-6067045)
[»] chr5 (4 HSPs)
chr5 (34-212)||(34152154-34152332)
chr5 (25-182)||(41695754-41695911)
chr5 (3-190)||(15567591-15567779)
chr5 (25-102)||(14050751-14050828)
[»] chr3 (4 HSPs)
chr3 (3-187)||(27856599-27856776)
chr3 (77-198)||(29540864-29540985)
chr3 (126-212)||(28728061-28728147)
chr3 (126-212)||(35544430-35544515)
[»] chr1 (3 HSPs)
chr1 (126-209)||(18285548-18285631)
chr1 (138-189)||(25447708-25447759)
chr1 (126-212)||(1190782-1190868)
[»] chr6 (3 HSPs)
chr6 (126-197)||(31826996-31827067)
chr6 (75-112)||(10230997-10231034)
chr6 (3-71)||(10231025-10231093)
[»] scaffold0495 (1 HSPs)
scaffold0495 (3-71)||(7747-7815)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14816323 - 14816084
Alignment:
Q  1 atgaaccatggagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctc 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14816323 atgaaccatgaagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttaatcctc 14816224  T
Q  101 caccatgccacaagtttccgtgtacaaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacgg 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |     
T  14816223 caccatgccacaagtttccgtgcacaaagaatcattgtaatccaaaatgtttctcctaaacagattcatttttgttactaatctattcagaaacaaatgc 14816124  T
Q  201 aaaataaaaatagacttaatagcagttttgaccccctatg 240  Q
     |||||||||||| |||||||||||||||| |||||||||    
T  14816123 caaataaaaataggcttaatagcagttttggccccctatg 14816084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 4259424 - 4259602
Alignment:
Q  34 aacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctccaccatgccacaagtttccgtgtacaaagaatc 133  Q
    ||||||||||||| |||||||||||||  || |||||||||| ||| |||||||  | ||||||||| ||||  || |||||  |||   | ||||||||    
T  4259424 aacccgatatcaaaagccaaagttgactataaaaaacacaagaaaagaacaaataattttgatcctctaccaatccgcaagtggccgaacaaaaagaatc 4259523  T
Q  134 attgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaaata 212  Q
    ||| |||||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||| |  |||||||||||    
T  4259524 attataatccaagatatttctcctaaacatattcatttttgttgctaatctattcaggaacaaatgccaaataaaaata 4259602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 14462271 - 14462099
Alignment:
Q  40 atatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctccaccatgccacaagtttccgtgtacaaagaatcattgta 139  Q
    ||||||| | ||||||||||| ||||||| ||||||||||||||  | |||| ||||||| | |||||||||||||  ||||| ||||||||| ||||||    
T  14462271 atatcaaaacccaaagttgactgtagaaagcacaagtaaaaaactgacggtcatgatcctacgccatgccacaagtagccgtgcacaaagaataattgta 14462172  T
Q  140 atccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaaata 212  Q
    |||||| || ||||||||||||| ||| ||||||||   |||||||||||| ||| |||   |||||||||||    
T  14462171 atccaatatgtttctcctaaacaaattaatttttgtcgttaatctattcaggaacgaacaccaaataaaaata 14462099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 14128179 - 14128265
Alignment:
Q  126 aaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaaata 212  Q
    ||||||||||| |||||||| |||||||||||||| |||||||| || ||| ||||| ||||| | |||||||   |||||||||||    
T  14128179 aaagaatcattataatccaagatatttctcctaaagagattcatcttagttgctaatttattctggaacaaacaccaaataaaaata 14128265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 15089513 - 15089451
Alignment:
Q  83 caaatggtcttgatcctccaccatgccacaagtttccgtgtacaaagaatcattgtaatccaa 145  Q
    |||||||| |||||| |||||||||||| ||||   |||| | ||||||||||||||||||||    
T  15089513 caaatggtattgatcatccaccatgccataagtagtcgtgcataaagaatcattgtaatccaa 15089451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 67793 - 67988
Alignment:
Q  4 aaccatggagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctccac 103  Q
    ||||||| |||||| ||||| ||| | |  ||||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||    
T  67793 aaccatgaagagccatagaaaaacattgtcaacccgatatcaaaagccaaagttgaatgtagaaaccacaagtaaaaaacaaatggtcttgatcctctac 67892  T
Q  104 catgccacaagtttccgtgtacaaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacg 199  Q
    ||||||||||||  ||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| |||  ||||||||    
T  67893 catgccacaagtagccgtgcacaaagaatcattataatccaaaatgtttctcctaaatagattcatttttgttgctaatctactcaagaacaaacg 67988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 33468429 - 33468599
Alignment:
Q  37 ccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctccaccatgccacaagtttccgtgtacaaagaatcatt 136  Q
    |||||||||| ||||||||||||  ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||   ||||| |||||||||||||    
T  33468429 ccgatatcaaaagccaaagttgattgtaaaaagcacaagtaaaaaacaaatggtcttgatcctccaccgtgccacaag---ccgtgcacaaagaatcatt 33468525  T
Q  137 gtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaaa 210  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||  ||||||||  |||||||||    
T  33468526 gtaatccaaattgtttctcctaaacagattcatttttgttactaatctattcaagaacaaacgccaaataaaaa 33468599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 198
Target Start/End: Original strand, 4780651 - 4780801
Alignment:
Q  48 agccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctccaccatgccacaagtttccgtgtacaaagaatcattgtaatccaaaa 147  Q
    |||||||||||||| || ||| |||||| ||| |||||||| ||||||||||| ||||  || ||||    ||   | ||||||||||| |||||||| |    
T  4780651 agccaaagttgaccataaaaagcacaagaaaagaacaaatgatcttgatcctcaaccaatccgcaagcggtcgaacaaaaagaatcattataatccaaga 4780750  T
Q  148 tatttctcctaaacagattcatttttgttactaatctattcagaaacaaac 198  Q
     ||||||| ||||||||||||| || |||  | |||||||||| |||||||    
T  4780751 catttctcttaaacagattcatcttagttgttgatctattcaggaacaaac 4780801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 4049791 - 4049582
Alignment:
Q  3 gaaccatggagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctcca 102  Q
    |||||||| |||| ||||||| |||||||  || |||||||||| ||||||||||||  ||||||| ||||| ||||||| |||||||||||||||||||    
T  4049791 gaaccatgaagagtcgtagaaaaacctagtcaatccgatatcaaaagccaaagttgattgtagaaagcacaaataaaaaataaatggtcttgatcctcca 4049692  T
Q  103 ccatgccacaagtttccgtgtacaaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaa 202  Q
    |||||||||||||   |||| ||||||||||||||||||| ||||| ||||| ||||||| ||||||||||||| |||||| |||||| || |||||       
T  4049691 ccatgccacaagtagtcgtgcacaaagaatcattgtaatcgaaaatgtttcttctaaacatattcatttttgttgctaatcgattcaggaataaacgctt 4049592  T
Q  203 aataaaaata 212  Q
    ||||||||||    
T  4049591 aataaaaata 4049582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 41973255 - 41973082
Alignment:
Q  3 gaaccatggagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctcca 102  Q
    |||||||| ||||||||| || |||||||| || |||||||||| ||||||||||||| ||| ||| ||||||||||||||||||| |||||||| ||||    
T  41973255 gaaccatgaagagccgtataaaaacctagccaatccgatatcaaaagccaaagttgactgtaaaaagcacaagtaaaaaacaaatgatcttgatcatcca 41973156  T
Q  103 ccatgccacaagtttccgtgtacaaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgtt 176  Q
    |||||||||||||   |||| |||||| |||||| ||||||||||| ||||| |||||| ||||||||||||||    
T  41973155 ccatgccacaagtagtcgtgcacaaagtatcattataatccaaaatgtttctactaaactgattcatttttgtt 41973082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 15993521 - 15993327
Alignment:
Q  18 gtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctccaccatgccacaagttt 117  Q
    ||||||||||||| | ||||| |||| || |||||| | ||||  || |||||||| |||||||||||||||| ||||||||| ||||||||||||||      
T  15993521 gtagaagaacctaaccaacccaatattaaaagccaatgatgactataaaaaacacaggtaaaaaacaaatggttttgatcctctaccatgccacaagtag 15993422  T
Q  118 ccgtgtacaaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaaata 212  Q
     |||  ||||||||||||||||||||||||| ||||||||||||| |||  |||||  ||||||||||||||| |||||||   |||||||||||    
T  15993421 tcgtacacaaagaatcattgtaatccaaaatgtttctcctaaacaaattattttttactactaatctattcaggaacaaacaccaaataaaaata 15993327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 58 - 212
Target Start/End: Original strand, 36713975 - 36714128
Alignment:
Q  58 gaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctccaccatgccacaagtttccgtgtacaaagaatcattgtaatccaaaatatttctcct 157  Q
    ||||||||||| |||||||| |||| ||||| |||||||||||||| |||||||||||   |||| ||||||||||||||||||||||||||||||||||    
T  36713975 gaccgtagaaagcacaagtataaaataaatgatcttgatcctccacaatgccacaagtagtcgtgcacaaagaatcattgtaatccaaaatatttctcct 36714074  T
Q  158 aaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaaata 212  Q
    ||||  ||||| ||||||| |||||||||| || ||||||||  | |||||||||    
T  36714075 aaacttattca-ttttgttgctaatctatttaggaacaaacgtcagataaaaata 36714128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 6650908 - 6651120
Alignment:
Q  1 atgaaccatggagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctc 100  Q
    |||||||||  |||||||| ||| | |||||| |||||  |||||| ||  ||||||||  ||| ||| ||||||||||| ||||||||| |||||||||    
T  6650908 atgaaccataaagagccgttgaaaagcctagccaaccccgtatcaaaaggtaaagttgaatgtaaaaatcacaagtaaaatacaaatggtattgatcctc 6651007  T
Q  101 caccatgccacaagtttccgtgtacaaa-gaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacg 199  Q
    ||||  |||||||||  ||||| | ||| |||||||||||||||||||  | ||||||||||| ||||||||| ||||||||| |||||||||||||| |    
T  6651008 cacccagccacaagtacccgtgcataaaagaatcattgtaatccaaaaagtatctcctaaacaaattcattttagttactaatttattcagaaacaaaag 6651107  T
Q  200 gaaaataaaaata 212  Q
      |||||||||||    
T  6651108 ccaaataaaaata 6651120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 6066967 - 6067045
Alignment:
Q  3 gaaccatggagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaa 81  Q
    |||||||| |||| ||||||| |||||||  ||||||||||||| |  |||||||||| ||||||| || |||||||||    
T  6066967 gaaccatgaagagtcgtagaaaaacctagtcaacccgatatcaaaattcaaagttgactgtagaaagcagaagtaaaaa 6067045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 34152154 - 34152332
Alignment:
Q  34 aacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctccaccatgccacaagtttccgtgtacaaagaatc 133  Q
    ||||||||||||| |||||||||||||| || ||| |||||| |||||||||||| || |||||||||||||  || ||||  |||    | ||||||||    
T  34152154 aacccgatatcaaaagccaaagttgaccataaaaagcacaagaaaaaaacaaatgatcctgatcctccaccaatccgcaagcgtccaaacaaaaagaatc 34152253  T
Q  134 attgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaaata 212  Q
    ||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |||||||   |||||||||||    
T  34152254 attataatccaagatatttctcctaaacagattcatctttgttgctaatctattcaggaacaaacaccaaataaaaata 34152332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 41695911 - 41695754
Alignment:
Q  25 aacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaa-caaatggtcttgatcctccaccatgccacaagtttccgtgt 123  Q
    |||||||| |||||||||| || |||||||||  ||  |||||| ||||||||||||| |||||||| |||||||||||||||||||||| |  || ||     
T  41695911 aacctagccaacccgatattaaaagccaaagta-actctagaaagcacaagtaaaaaaacaaatggttttgatcctccaccatgccacaaatagccttgc 41695813  T
Q  124 acaaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaat 182  Q
    |||| ||| |||||||||  ||||| ||||||||||||||||||||||||||| |||||    
T  41695812 acaatgaaacattgtaataaaaaatgtttctcctaaacagattcatttttgttgctaat 41695754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 15567779 - 15567591
Alignment:
Q  3 gaaccatggagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaa-cacaagtaaaaaacaaatggtcttgatcctcc 101  Q
    |||||||| | |||||||||| |||||| |  | | |||||||| || |||||||||  |||||||| ||||||||||| ||||||| ||||||||||||    
T  15567779 gaaccatgaaaagccgtagaaaaacctaaccgatctgatatcaaaagtcaaagttgatggtagaaaaacacaagtaaaacacaaatgatcttgatcctcc 15567680  T
Q  102 accatgccacaagtttccgtgtacaaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcag 190  Q
    ||| | ||  |||||   ||| ||||||||||||||||||| ||||| ||| |||||||||  |||||||| ||| ||||| |||||||    
T  15567679 accttaccgtaagttattgtgcacaaagaatcattgtaatctaaaatgtttgtcctaaacaagttcattttagttgctaatttattcag 15567591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 14050828 - 14050751
Alignment:
Q  25 aacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctcca 102  Q
    |||||||||||||||||||||| ||||||| || || ||| ||| |||||||| ||||||||||||||||||||||||    
T  14050828 aacctagctaacccgatatcaaaagccaaatttaactgtaaaaagcacaagtataaaacaaatggtcttgatcctcca 14050751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 27856599 - 27856776
Alignment:
Q  3 gaaccatggagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaacacaagtaaaaaacaaatggtcttgatcctcca 102  Q
    |||||||||| || ||||||| |||||||| ||||||||||||| || |||||||||| ||||||| || | |||||||||||||       ||||||||    
T  27856599 gaaccatggaaagtcgtagaaaaacctagccaacccgatatcaaaagtcaaagttgactgtagaaagcaaaggtaaaaaacaaat-------atcctcca 27856691  T
Q  103 ccatgccacaagtttccgtgtacaaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctatt 187  Q
    | || ||||||||  ||||| |||| ||||||||||||||| |||||||| || |||| |||||||||||||||  |||||||||    
T  27856692 caataccacaagtagccgtgcacaatgaatcattgtaatccgaaatatttttcttaaaaagattcatttttgttgttaatctatt 27856776  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 29540864 - 29540985
Alignment:
Q  77 aaaaaacaaatggtcttgatcctccaccatgccacaagtttccgtgtacaaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgtt 176  Q
    ||||||||| |||| ||||||||||||||||||||||||  ||||| ||||||||| ||||||||| ||||| |||||| |||||| || ||||||||||    
T  29540864 aaaaaacaattggttttgatcctccaccatgccacaagtagccgtgcacaaagaattattgtaatctaaaatgtttctcttaaacatatccatttttgtt 29540963  T
Q  177 actaatctattcagaaacaaac 198  Q
     ||||| |||| || |||||||    
T  29540964 gctaatttatttaggaacaaac 29540985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 28728147 - 28728061
Alignment:
Q  126 aaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaaata 212  Q
    |||||||| || |||| ||| |||||||||| ||||||||| || || ||| |||||||||||| |||||||||  |||||||||||    
T  28728147 aaagaatcgttataattcaagatatttctccaaaacagatttatcttagttgctaatctattcaaaaacaaacgccaaataaaaata 28728061  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 35544515 - 35544430
Alignment:
Q  126 aaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaaata 212  Q
    ||||||| ||| |||||||| ||||||||||||||| || || || | ||| ||||||||||||| ||||||||  ||| |||||||    
T  35544515 aaagaataattataatccaagatatttctcctaaaccga-tctttgtagttgctaatctattcaggaacaaacgtcaaaaaaaaata 35544430  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 18285631 - 18285548
Alignment:
Q  126 aaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaa 209  Q
    ||||||||||| |||||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||  ||||||||    
T  18285631 aaagaatcattataatccaatatatttctcctaaacatattcatctttgttgctaatctattcagaaacaaacgacaaataaaa 18285548  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 25447708 - 25447759
Alignment:
Q  138 taatccaaaatatttctcctaaacagattcatttttgttactaatctattca 189  Q
    ||||| ||||||||||||||||||| |||||| |||||| ||||||| ||||    
T  25447708 taatctaaaatatttctcctaaacaaattcatctttgttgctaatctgttca 25447759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 1190868 - 1190782
Alignment:
Q  126 aaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaacggaaaataaaaata 212  Q
    ||||||||||| |||| ||  |||||||||||||| |||||||||||  ||  ||||||||| || ||||||||  ||||| |||||    
T  1190868 aaagaatcattataattcatgatatttctcctaaatagattcattttaattgttaatctatttaggaacaaacgtcaaatacaaata 1190782  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 31826996 - 31827067
Alignment:
Q  126 aaagaatcattgtaatccaaaatatttctcctaaacagattcatttttgttactaatctattcagaaacaaa 197  Q
    ||||| ||||| ||||||||||||||||||||||||| |||||| || ||| ||||||||||| | ||||||    
T  31826996 aaagattcattataatccaaaatatttctcctaaacatattcatcttagttgctaatctattctggaacaaa 31827067  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 10231034 - 10230997
Alignment:
Q  75 gtaaaaaacaaatggtcttgatcctccaccatgccaca 112  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  10231034 gtaaaaaacaaatggtcttgatcctccacgatgccaca 10230997  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 10231093 - 10231025
Alignment:
Q  3 gaaccatggagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaaca 71  Q
    |||||||| ||||||| |||| ||| |||  ||||||||||||| || |||||||||| ||| ||||||    
T  10231093 gaaccatgaagagccgcagaaaaacatagtcaacccgatatcaaaagtcaaagttgactgtaaaaaaca 10231025  T

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Target: scaffold0495 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 7815 - 7747
Alignment:
Q  3 gaaccatggagagccgtagaagaacctagctaacccgatatcaatagccaaagttgaccgtagaaaaca 71  Q
    |||||||| ||||||| |||| ||| |||  ||||||||||||| || |||||||||| ||| ||||||    
T  7815 gaaccatgaagagccgcagaaaaacatagtcaacccgatatcaaaagtcaaagttgactgtaaaaaaca 7747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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