View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_high_26 (Length: 246)
Name: NF2335_high_26
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 3949592 - 3949814
Alignment:
| Q |
14 |
gtagatgcacccgtaattagagagggggaaataaagctaccttaggaattaggaggggggacctaagcatcaaaaccaacccaattctacccatcaaaag |
113 |
Q |
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| T |
3949592 |
gtagatgcacccgtaattagagagggggaaataaagctaccttaggaattaggaggggggacctaagcatcaaaaccaacccaattctacccatcaaaag |
3949691 |
T |
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| Q |
114 |
ctgacaacaatgcacccttaacaaatgtacagacaaagatctcacattctcactctccattttgagattgagtttatatttgattattaacactcactca |
213 |
Q |
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| T |
3949692 |
ctgacaacaatgcacccttaacaaatgtacagacaaagatctcacattctcactctccattttgagattgagtttatatttgattattaatactcactca |
3949791 |
T |
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| Q |
214 |
cttttttgtttggaacatttcat |
236 |
Q |
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| T |
3949792 |
cttttttgtttggaacatttcat |
3949814 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 35199179 - 35199091
Alignment:
| Q |
69 |
gggggacctaagcatcaaaaccaacccaattctacccatcaaaagctgacaacaatgcacccttaacaaatgtacagacaaagatctcac |
158 |
Q |
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| T |
35199179 |
gggggaccaaagcatcaaatccaagccaactgtacccatcaaaatgtgcccacaatgcaccctaaac-tatgtgcagacatagatctcac |
35199091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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