View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_high_27 (Length: 242)
Name: NF2335_high_27
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 35052816 - 35052608
Alignment:
| Q |
19 |
catttttcttgaccaccatttcccttgtatgtttatattttaatttttaagtgttactcttcaaatatacaccgctatgagatagacttacctgtctaaa |
118 |
Q |
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| T |
35052816 |
catttttcttgaccaccatttcccttgtatgtttatattttaatttttaagtgttactcttcaaatatacaccgctatgagatagacttacctgtctaaa |
35052717 |
T |
|
| Q |
119 |
tcctgttttattaaatatgttgtaccatcaaaacacagcaaaatgattcaaatgggttatctttttcaatttgatttttcttattctttgtcacaccttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35052716 |
tcctgttttattaaatatgttgtaccatcaaaacacaccaaaatgattcaaataggttatctttttcaatttgatttttcttattctttgtcacaccttg |
35052617 |
T |
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| Q |
219 |
ctgcctttg |
227 |
Q |
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||||||||| |
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| T |
35052616 |
ctgcctttg |
35052608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 35068735 - 35068527
Alignment:
| Q |
19 |
catttttcttgaccaccatttcccttgtatgtttatattttaatttttaagtgttactcttcaaatatacaccgctatgagatagacttacctgtctaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |
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| T |
35068735 |
catttttcttgaccaccatttcccttgtatgtttatattttaatttttaagtgttactcttcaaatatacactgctaggagatagacttacctgtccaaa |
35068636 |
T |
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| Q |
119 |
tcctgttttattaaatatgttgtaccatcaaaacacagcaaaatgattcaaatgggttatctttttcaatttgatttttcttattctttgtcacaccttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
35068635 |
tcctgttttattaaatatgttgtaccatcaaaacacaccaaaatgattcaaatgggttatctttttcaatttgatttttcttattccttgtcacaacttg |
35068536 |
T |
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| Q |
219 |
ctgcctttg |
227 |
Q |
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||||||||| |
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| T |
35068535 |
ctgcctttg |
35068527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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