View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_high_28 (Length: 241)
Name: NF2335_high_28
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 9336799 - 9337006
Alignment:
| Q |
1 |
ccattctgataacattattcttcgcactcaagccctagctatctctaccaatgcgcacccaat----gacgtgggaagccctaatgtcgaaaaagtatct |
96 |
Q |
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| T |
9336799 |
ccattctgataacattattcttcgcactcaagccctagctatctctaccaatgcgcacccaattaatgacgtgggaagccctaatgtcggaaaagtatct |
9336898 |
T |
|
| Q |
97 |
taatatatataacttatgactacacttttctactttcaccactaaaccacttccatttggattgaaatattgttgcttccaaaattgatataccataccg |
196 |
Q |
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| T |
9336899 |
taatat--ataacttatgactacacttttctactttcaccaccaacccacttccatttggattgaaatattgttgcttccaaaattgatatactgtaccg |
9336996 |
T |
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| Q |
197 |
tactaaaaca |
206 |
Q |
| |
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|||||||||| |
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| T |
9336997 |
tactaaaaca |
9337006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 40147912 - 40147851
Alignment:
| Q |
128 |
actttcaccactaaaccacttccatttggattgaaatattgttgcttccaaaattgatatacc |
190 |
Q |
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| T |
40147912 |
actttcaccaataaacaacttccattttgattgaaa-attgcagcttccaaaattgatatacc |
40147851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 14138994 - 14139055
Alignment:
| Q |
127 |
tactttcaccactaaaccacttccatttggattgaaatattgttgcttccaaaattgatata |
188 |
Q |
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| T |
14138994 |
tacttttaccactaaaccacttctgtttttgttgaaatattgttgtttccaaaattgatata |
14139055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 35918243 - 35918181
Alignment:
| Q |
128 |
actttcaccactaaaccacttccatttggattgaaatattgttgcttccaaaattgatatacc |
190 |
Q |
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| T |
35918243 |
actttcaccactaaaccacttccattttgattgaaaaattgttgcttccaaaattgatatacc |
35918181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 7713489 - 7713547
Alignment:
| Q |
130 |
tttcaccactaaaccacttccatttggattgaaatattgttgcttccaaaattgatata |
188 |
Q |
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| T |
7713489 |
tttcaccactaagccactttcattttaattgaaatattgctgcttccaaaattgatata |
7713547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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