View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_high_4 (Length: 512)
Name: NF2335_high_4
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 3 - 499
Target Start/End: Original strand, 24890188 - 24890686
Alignment:
| Q |
3 |
atccatgcatcggtgtgaactacgtactttgacatgttattttagcacaaaaataggaatgttattttattcataaagagttgaaaattgtcttcgcgta |
102 |
Q |
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| T |
24890188 |
atccatgcatcggtgtgaactacgtactttgacatgttattt-agcacaaaaataggaatgttattttattcataaagagttgaaaattgtcttcgcgta |
24890286 |
T |
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| Q |
103 |
agt----acattcaacaaggctaaaatgtgtattgcaacactttcctacggtaaaaaataaaacatatttcatttctaataaagtggatgnnnnnnnccc |
198 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24890287 |
agtccgtacattcaacaaggctaaaatgtgtattgcaacactttcctacggtaaaaaataaaacatatttcatttctaataaagtggatgttttttttcc |
24890386 |
T |
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| Q |
199 |
agtaaagaatgaaaaaaggagcattacaaatggattggacacaattgaagttgctgctgct-atggaaatggatggggtggcaacaatacactttgtgag |
297 |
Q |
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| T |
24890387 |
aataaataatgaaaaaaggagcattacaaatggattggacacaattgaagtt--tgctatggatggaaatggatggggtggcaacaatacactttgtgag |
24890484 |
T |
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| Q |
298 |
tacatcaattatcaggggttttgccaaatcaataggtttgattgatagcattcaatcaagtagctcaatatttcgaatataaaaaatttaattaaggttt |
397 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |
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| T |
24890485 |
tacatcaattatgaggggttttgccaaatcaataggtttgattgatagcattcaatcaagtagttcaatatttcgaatataaaaaaattatttaaggttt |
24890584 |
T |
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| Q |
398 |
actctatcaaataccctaataatgaaacaaaaggatcctagaacttgaagttgactttcgattcgcaacatatattttgaaagtgctagactttcacagg |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
24890585 |
actctatcaaataccctaataatgaaacaaaaggatcctagaacttgaagttgactttcgattcgcaacatatattttgaaaatgctagacttttacagg |
24890684 |
T |
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