View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_high_8 (Length: 428)
Name: NF2335_high_8
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 45332204 - 45332582
Alignment:
| Q |
16 |
caaagtactctcaatagtttataatgcacaagttgtgcattgaaatgtatattaaatgacttaattttaggtgagggttcaaagtacttgtaacttgggt |
115 |
Q |
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| T |
45332204 |
caaagtactctcaatagtttataatgcacaagttgtgcattgaaatgtatattgaatgacttaatgttaagtgag----------------------ggt |
45332281 |
T |
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| Q |
116 |
tcaaagtattctcaatagtttacaatggttcgaaatttcgaatgacttaattaaaccctcacctaaaattcaattattttttccaatttattnnnnnnnn |
215 |
Q |
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| T |
45332282 |
tcaaagtactctcaatagtttacaatggttcgaaacttcgaatgacttaattgaaccctcacctaaaattcaattattttttccaatttattaaaaaaat |
45332381 |
T |
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| Q |
216 |
nnnnnncaatcgtctccatcttcactttcttttaaaatacgcaaatcaaacttcttatgcaatcaaataaaaaatttttgctcaaaacttttttccgtcg |
315 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |
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| T |
45332382 |
aatttt---tcgtctccatcttcactttcttttaaaatacccaaatcaaacttcttatgcaatcaaataaaaaaaatttgctcaaaacttttttccattg |
45332478 |
T |
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| Q |
316 |
acgccaaagcaaatatatatatgctgataagggaagacaagtatgactccaaatgtttaacaaattaaaatattcctctaattgggggaatagttcaagc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45332479 |
acgccaaagcaaatatatatatgctgataagggaagacaagtatgactccaaatgtttaacaaattaaaatattcctctaattgggggaatagttcaagc |
45332578 |
T |
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