View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_low_10 (Length: 423)
Name: NF2335_low_10
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 55379762 - 55379983
Alignment:
| Q |
1 |
gacctatgtccaactgcttttggacataacatatatgcctgagaaaattcattgaaatatatcataagtatacatgcatgcacctatgcatgtaatataa |
100 |
Q |
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| T |
55379762 |
gacctatgtccaactgcttttggacataacatatatgcctgagaaaattcattgaaata-------agtatacatgcatgcacctatgcatgtaatataa |
55379854 |
T |
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| Q |
101 |
tttgaaaactttccggtagccacatatacaatatcagcaagcatgccggtgcaacatgagaataacaggctctaaaatttaaactttaaaaaagccatga |
200 |
Q |
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| T |
55379855 |
tttgaaaactttccggtagccacatatacaatatcagcaagcatgccggtgcaacatgagaataacaggctctaaaatttaacctttaaaaaagccatga |
55379954 |
T |
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| Q |
201 |
tagcacaatatactagtaatatgttagat |
229 |
Q |
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| T |
55379955 |
tagcacaatatactagtaatatgttagat |
55379983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 221 - 407
Target Start/End: Original strand, 55380157 - 55380343
Alignment:
| Q |
221 |
atgttagatactagttcaaatattaataaatattgaagatagttcgatggtatttgggagattattggataataacaaggaaatgtacatgatgtattat |
320 |
Q |
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| T |
55380157 |
atgttagacactagttcaaatattaataaatattgaagatagttcgatggtatttgggagattattggataataacaaggaaatgtacatgatgtattat |
55380256 |
T |
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| Q |
321 |
tgatacacactatggttattctgccaatagaggtggttacattaatcagcagaaaaacaaaactgatgccatagaaaactaacaaac |
407 |
Q |
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| T |
55380257 |
tgatacacactatggttattctgccaatagaggtggttacattaatcagcagaaaaacaaaactgatgccatagaaaactaacaaac |
55380343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 365
Target Start/End: Complemental strand, 832284 - 832139
Alignment:
| Q |
222 |
tgttagatactagttcaaatattaataaatattgaagatagttcgatggtatttgggagattattggataataacaaggaaatgtacatgatgtattatt |
321 |
Q |
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||||||||||| ||||| ||| || |||||| | |||| ||| ||| |||||||| |||||||||||||||| |||| ||||||| | |||||||||| |
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| T |
832284 |
tgttagatactggttcagataatattaaataccaatgataattctatgatatttgggggattattggataataataagggaatgtacgt-atgtattatt |
832186 |
T |
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| Q |
322 |
---gatacacactatggttattctgccaatagaggtggttacattaa |
365 |
Q |
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| T |
832185 |
aatgatgcattctgtggttattctgccaacagagatggttacattaa |
832139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 17165852 - 17165932
Alignment:
| Q |
225 |
tagatactagttcaaatattaataaatattgaagatagttcgatggtatttgggagattattggataataacaaggaaatg |
305 |
Q |
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| T |
17165852 |
tagatactggttcagatgtgaataaatatcgatgataattctatggtatttgggagattattgcataataataagggaatg |
17165932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 41483203 - 41483140
Alignment:
| Q |
258 |
gatagttcgatggtatttgggagattattggataataacaaggaaatgtacatgatgtattatt |
321 |
Q |
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| T |
41483203 |
gataattctatggtatttgggagattattgcataataataagggaatgcacgtgatgtattatt |
41483140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 33215065 - 33215153
Alignment:
| Q |
217 |
taatatgttagatactagttcaaatattaataaatattgaagatagttcgatggtatttgggagattattggataataacaaggaaatg |
305 |
Q |
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| T |
33215065 |
taatctgttagatactggttcagatgtgaataaataccgatgataattcaatggtatttgggagattattgcataataataagggaatg |
33215153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 12987364 - 12987427
Alignment:
| Q |
258 |
gatagttcgatggtatttgggagattattggataataacaaggaaatgtacatgatgtattatt |
321 |
Q |
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|||| ||| ||||||||||||||||||| | ||||||| |||| |||| || |||||||||||| |
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| T |
12987364 |
gataattctatggtatttgggagattatagcataataataagggaatgcacgtgatgtattatt |
12987427 |
T |
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