View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_low_17 (Length: 321)
Name: NF2335_low_17
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 14166563 - 14166269
Alignment:
| Q |
13 |
aaaatattgttactacaatgattt-aactttacattttctgatcatattgtaggtggtgcgagatgcaatcaagaaggttggaaccgatgaggatgcgct |
111 |
Q |
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| T |
14166563 |
aaaatattgttactacaatgatttgaactttacattttctgatcaaatcgtaggtggtgcgagatgcaatcaagaaggttggaactgatgaggatgcgct |
14166464 |
T |
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| Q |
112 |
cacccgtgtgattgtgagcagagctcagcatgacctaaaagtcatctcagatgtttactacaaaagaaacagtgttcttcttgagcatgttgtggccaag |
211 |
Q |
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| T |
14166463 |
gacccgtgtgattgtgagcagagctcagcatgacctaaaagtcatctcagatgtttactacaaaagaaacagtgttcttcttgagcatgttgtggccaag |
14166364 |
T |
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| Q |
212 |
gaaacttcaggggattacaagaagtttcttctcactctcttggggaaagaggaatgagtttttcccttctcttgatggagcttgtgcttaatagt |
306 |
Q |
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| T |
14166363 |
gaaacttcaggggattacaagaagtttcttctcactctcttggggaaagaggaatgagtttttcccttctcttgatggagcttgtgcttaatagt |
14166269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 5181674 - 5181766
Alignment:
| Q |
167 |
tactacaaaagaaacagtgttcttcttgagcatgttgtggccaaggaaacttcaggggattacaagaagtttcttctcactctcttggggaaa |
259 |
Q |
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| T |
5181674 |
tactacaagagaaacagtgttcatcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaa |
5181766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 5189555 - 5189592
Alignment:
| Q |
89 |
gttggaaccgatgaggatgcgctcacccgtgtgattgt |
126 |
Q |
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| T |
5189555 |
gttggaaccgatgaggatgcactcacccgtgtgattgt |
5189592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 5246335 - 5246431
Alignment:
| Q |
170 |
tacaaaagaaacagtgttcttcttgagcatgttgtggccaaggaaacttcaggggattacaagaagtttcttctcactctcttggggaaagaggaat |
266 |
Q |
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| T |
5246335 |
tacaagagaaatagtgtccaacttgagcatgcagtggccaaaaaaacttcaggagattacaagaaatttctccttactctgatggggaaagaagaat |
5246431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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