View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_low_18 (Length: 321)
Name: NF2335_low_18
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 27373547 - 27373855
Alignment:
| Q |
12 |
caaagggaaaaagaaataagggaaagagatattaccttcaaaactggggaatgaaaagatggnnnnnnngcaaactttgttggggagggatgtgacaaat |
111 |
Q |
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| T |
27373547 |
caaagggaaaaagaaataagggaaagagatattaccttcaaaactggggaatgaaaagatggaaaaaa-gcaaactttgttggggagggatgtgacaaat |
27373645 |
T |
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| Q |
112 |
gtagctctgctagggcttaatgtatgccctagcaaagagacagcataaaagatgagaaaagtgtgatagtttaacacatttgattgataatcttcaacgt |
211 |
Q |
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| T |
27373646 |
gtagctctgctagggcttaatgtatgccctagcaaagagacagcataaaagatgagaaaagtgtgatagtttaacacatttgattgataatcttcaacgt |
27373745 |
T |
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| Q |
212 |
gtaatagtgaaagccctgcttcaaaagagggacaaaggaaactgtaaatgaaatatagaagctaaagtttttccaatttttggcttatgaaatccattta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27373746 |
gtaatagtgaaagccctgcttcaaaagagggacaaaggaaactgtaaatgaaatatagaagctaaagtttttccaatttttggcttatgaaatccattta |
27373845 |
T |
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| Q |
312 |
catatttgtt |
321 |
Q |
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| T |
27373846 |
catatttgtt |
27373855 |
T |
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