View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_low_2 (Length: 682)
Name: NF2335_low_2
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 628; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 18 - 673
Target Start/End: Complemental strand, 2178984 - 2178329
Alignment:
| Q |
18 |
ataagaatgaccgtgagcttctacctcccaaaagtgtcaccaatgaaaattaaatgaacattcttaagtaccggtccttcttatcctcagcatcatccaa |
117 |
Q |
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| T |
2178984 |
ataagaatgaccatgagcttctacctcccaaaagtgtcaccaatgaaaattaaatgaacattcttaagtaccggtccttcttatcctcagcatcatccaa |
2178885 |
T |
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| Q |
118 |
caaacatgatcaaaattaaaggccaacaacaaggccaaagttctgcatcacctaggcaataatgaagtcgaaattctgcagaaaacgaaacattatacat |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2178884 |
caaacatgatcaaaattaaaggccaacaacgaggccaaagttctgcatcacctaggcaataatgaagtcaaaattctgcagaaaacgaaacattatacat |
2178785 |
T |
|
| Q |
218 |
ccaccacttcacatcaatgaagccaacaatgagtgatgacattactaatttaatgacttgcacaagaacatacattttttagtactaggtaacaaatata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2178784 |
ccaccacttcacatcaatgaagccaacaatgagtgatgacattactaatttaatgacttgcacaagaacatacattttttagtactaggtaacaaatata |
2178685 |
T |
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| Q |
318 |
ctaaagctcacacattaaaacttgcattacaaactaaaattcttcttcataattctaacattcttgtccatgtcttaatactaaacattcaacccactct |
417 |
Q |
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| T |
2178684 |
caaaagctcacacattaaaacttgcattacaaactaaaattcttcttcataattctaacattcttgtccatgtcttaatactaaatattcaacctactct |
2178585 |
T |
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| Q |
418 |
actataatgcctgatgtacagatattgactattgagattgtaattcagcataacaatgtctcaaattaagaatattaatctaactataataatctaaaat |
517 |
Q |
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| T |
2178584 |
actataatgcctgatgtacagatattgactattgagattgtaattcagcataacaatgtctcaaattaagaatattaatctaactataataatctaaaat |
2178485 |
T |
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| Q |
518 |
aagaatgtaatgtaagcatggaaatagatattcatactaatgttttaatacgactctaatcttagcatcgatgaagtgaccatctcagcatcttctttct |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2178484 |
aagaatgtaatgtaagcatggaaatagatattcatactaatgttttaatacgactctaatcttagcatcgatgaagtgaccatctcagcatcttctttct |
2178385 |
T |
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| Q |
618 |
tctccgctgatgaatcctctccatctgactcttgcgttgcactagttccttcttct |
673 |
Q |
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| T |
2178384 |
tctccgctgatgaatcctctccatctgactcttgctttgcactagttccttcttct |
2178329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 489 - 577
Target Start/End: Complemental strand, 6969256 - 6969167
Alignment:
| Q |
489 |
atattaatctaact-ataataatctaaaataagaatgtaatgtaagcatggaaatagatattcatactaatgttttaatacgactctaat |
577 |
Q |
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|||||||||||||| ||||||| |||| ||||| | ||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |
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| T |
6969256 |
atattaatctaacttataataaagtaaattaagactcgaatgtaagcatagaaatagagattcatactaatgttttaataagactctaat |
6969167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 577
Target Start/End: Original strand, 51315836 - 51315906
Alignment:
| Q |
507 |
taatctaaaataagaatgtaatgtaagcatggaaatagatattcatactaatgttttaatacgactctaat |
577 |
Q |
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|||| |||||||||| | || ||||| |||||||||||||||||||| ||| ||||| ||| ||||||||| |
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| T |
51315836 |
taatgtaaaataagactctattgtaaacatggaaatagatattcatattaacgttttcataagactctaat |
51315906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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