View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2335_low_21 (Length: 296)
Name: NF2335_low_21
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 8818491 - 8818758
Alignment:
| Q |
17 |
acaaagaaacaccatggtaaccaagtgctaatcattagttccatcttattgataacacatagtcctgatttccaattctgaaaattaaattgatcctcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8818491 |
acaaagaaacaccatggtaaccaagtgctaatcattagttccatcttattgataacacatagtcctgatttccaattctgaaaattaaattgatcctcat |
8818590 |
T |
|
| Q |
117 |
tataaaaatcaaacatcataaatatatggtgaaactacgtttgccattgcaaactcaagtttgagcttcccacaatagagccaaacaagtataaaaacaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8818591 |
tataaaaatcaaacatcataaatatatggtgaaactacgtttgccattgcaaactcaagtttgagcttcccacaatagagccaaacaagcataaaaacaa |
8818690 |
T |
|
| Q |
217 |
ctcatgtattacttcttatatacacattaacgatacatacacaacttttttcaaattcgcatgacctttg |
286 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
8818691 |
ctcatgtattacttcttatat--acattaacgatacatacacaacttttttcaaattcacgtgacctttg |
8818758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University