View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2335_low_25 (Length: 252)

Name: NF2335_low_25
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2335_low_25
NF2335_low_25
[»] chr4 (1 HSPs)
chr4 (1-235)||(39131945-39132179)
[»] chr7 (7 HSPs)
chr7 (4-219)||(21130560-21130775)
chr7 (1-219)||(18658719-18658937)
chr7 (1-219)||(21111597-21111815)
chr7 (1-71)||(21123429-21123499)
chr7 (19-164)||(21098492-21098637)
chr7 (19-164)||(21108111-21108256)
chr7 (80-128)||(29213204-29213252)
[»] chr3 (12 HSPs)
chr3 (42-152)||(26751165-26751275)
chr3 (16-152)||(26713967-26714103)
chr3 (10-152)||(26737197-26737339)
chr3 (42-152)||(26744240-26744350)
chr3 (80-173)||(47212442-47212535)
chr3 (10-152)||(26698809-26698951)
chr3 (10-152)||(26733972-26734114)
chr3 (80-149)||(26690345-26690414)
chr3 (80-149)||(26731656-26731725)
chr3 (80-149)||(26694506-26694575)
chr3 (46-176)||(47193355-47193485)
chr3 (46-101)||(9792530-9792585)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39132179 - 39131945
Alignment:
Q  1 ttagttttagatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39132179 ttagttttagatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaa 39132080  T
Q  101 tcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttgattagcttcattcaatctctttattgctgcttgtct 200  Q
    | ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39132079 ttaagttcatgtgattgagccttccgatgatgcttacttcagcaagaaactctccttccccttgattagcttcattcaatctctttattgctgcttgtct 39131980  T
Q  201 ttgatccggcaatgtacctaggtatacaacccctc 235  Q
    |||||||||||||||||||||||||||||||||||    
T  39131979 ttgatccggcaatgtacctaggtatacaacccctc 39131945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 21130560 - 21130775
Alignment:
Q  4 gttttagatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatca 103  Q
    ||||| |||||||||||||| ||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21130560 gttttggatgaaagattttccgctaaagaaccattttccatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatca 21130659  T
Q  104 agttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttgattagcttcattcaatctctttattgctgcttgtctttg 203  Q
    | ||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||    
T  21130660 aattcatgtggttaagcttttcaatgatgcttacttcagcaagaaactctccttctccttgtttagcttcattcaatctctttattgctgcatctctttg 21130759  T
Q  204 atccggcaatgtacct 219  Q
    ||||||||||||||||    
T  21130760 atccggcaatgtacct 21130775  T

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Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 18658719 - 18658937
Alignment:
Q  1 ttagttttagatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaa 100  Q
    ||||||||||||||||||||||||||||||||  |||| | |||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  18658719 ttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatatcaa 18658818  T
Q  101 tcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttgattagcttcattcaatctctttattgctgcttgtct 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||||    
T  18658819 tcaagttcatgtggttaagccgtccaatgatgcttacttcagcaagaaattctccttctccttgtttagcttcatttaatctctttattgctgcatgtct 18658918  T
Q  201 ttgatccggcaatgtacct 219  Q
    |||||| ||||||||||||    
T  18658919 ttgatctggcaatgtacct 18658937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 21111597 - 21111815
Alignment:
Q  1 ttagttttagatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaa 100  Q
    ||||||||||||||||||||||||||||||||  |||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |    
T  21111597 ttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatttcta 21111696  T
Q  101 tcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttgattagcttcattcaatctctttattgctgcttgtct 200  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||| | |||||    
T  21111697 tcaagttcatgtggttaagccgtccaatgatacttacttcggcaagaaattctccttctccttgtttagcttcatttaatctctttattgctacatgtct 21111796  T
Q  201 ttgatccggcaatgtacct 219  Q
    || ||| ||||||||||||    
T  21111797 ttcatctggcaatgtacct 21111815  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21123429 - 21123499
Alignment:
Q  1 ttagttttagatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgctt 71  Q
    ||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||    
T  21123429 ttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaattctatgctt 21123499  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 21098637 - 21098492
Alignment:
Q  19 ttttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaa 118  Q
    ||||| ||||||||  |||| | ||||||||| || ||||| | |||||  || || ||| | ||||||||||||||||| ||||| |||||||| ||||    
T  21098637 ttttcggctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaa 21098538  T
Q  119 gccttccaatgatgcttacttcagcaagaaactctccttccccttg 164  Q
    ||||||||||||| | ||||||||| ||||| || ||||| |||||    
T  21098537 gccttccaatgattcctacttcagctagaaattcaccttcaccttg 21098492  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 21108256 - 21108111
Alignment:
Q  19 ttttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaa 118  Q
    ||||| ||||||||  |||| | ||||||||| || ||||| | |||||  || || ||| | ||||||||||||||||| ||||| |||||||| ||||    
T  21108256 ttttcggctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaa 21108157  T
Q  119 gccttccaatgatgcttacttcagcaagaaactctccttccccttg 164  Q
    ||||||||||||| | ||||||||| ||||| || ||||| |||||    
T  21108156 gccttccaatgattcctacttcagctagaaattcaccttctccttg 21108111  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 29213204 - 29213252
Alignment:
Q  80 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaat 128  Q
    ||||||| ||||||| ||||||||| ||||||||||||||| |||||||    
T  29213204 cacaataaccccacaattcaatcaaattcatgtggttaagctttccaat 29213252  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 26751165 - 26751275
Alignment:
Q  42 catgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttca 141  Q
    |||||||||||| ||||| | ||||||||| || ||| ||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||| |||||     
T  26751165 catgtactcataaaccaacaatctatgctttccctcagcacaataaccccacataccaatcaaattcatgtggttaagccttccaatgatgctaacttcg 26751264  T
Q  142 gcaagaaactc 152  Q
    |||||||||||    
T  26751265 gcaagaaactc 26751275  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 26713967 - 26714103
Alignment:
Q  16 agattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggt 115  Q
    ||||| ||||||||||   |||| | |||||||||||| ||||| | | |||| || || ||| ||||||| ||||||||| ||||||| ||||||||||    
T  26713967 agattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaatcaaattcatgtggt 26714066  T
Q  116 taagccttccaatgatgcttacttcagcaagaaactc 152  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  26714067 taagccttccaatgatgctaacttctgcaagaaactc 26714103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 26737197 - 26737339
Alignment:
Q  10 gatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttca 109  Q
    ||||| ||||| ||||||||||   |||| | |||||||||||| ||||| | | |||| || || ||| ||||||| ||||||||| |||| || ||||    
T  26737197 gatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattca 26737296  T
Q  110 tgtggttaagccttccaatgatgcttacttcagcaagaaactc 152  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  26737297 tgtggttaagccttccaatgatgctaacttctgcaagaaactc 26737339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 26744240 - 26744350
Alignment:
Q  42 catgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttca 141  Q
    |||| |||| || ||||| | |||||| || || ||| ||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||||    
T  26744240 catgcactcgtaaaccaacaatctatgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttccaatgatgcttacttca 26744339  T
Q  142 gcaagaaactc 152  Q
    |||||||||||    
T  26744340 gcaagaaactc 26744350  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 173
Target Start/End: Original strand, 47212442 - 47212535
Alignment:
Q  80 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttgattagcttc 173  Q
    ||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||||| || ||||||||| |||| |||||||| |||||    
T  47212442 cacaataaccccacatttcaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc 47212535  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 26698809 - 26698951
Alignment:
Q  10 gatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttca 109  Q
    ||||| ||||| ||||||||||   |||| | |||||||||||| ||||| | ||| || || || ||  ||||||| ||||||||| | ||||| ||||    
T  26698809 gatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattca 26698908  T
Q  110 tgtggttaagccttccaatgatgcttacttcagcaagaaactc 152  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  26698909 tgtgattaagccttccaatgatgctaacttcagcaagaaactc 26698951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 26733972 - 26734114
Alignment:
Q  10 gatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttca 109  Q
    ||||| ||||| ||||||||||   |||| | |||||||||||| ||||| | ||| || || || ||  ||||||| ||||||||| | ||||| ||||    
T  26733972 gatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattca 26734071  T
Q  110 tgtggttaagccttccaatgatgcttacttcagcaagaaactc 152  Q
    |||| |||||||||||||||||||| |||||| ||||||||||    
T  26734072 tgtgattaagccttccaatgatgctaacttcaacaagaaactc 26734114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 26690414 - 26690345
Alignment:
Q  80 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa 149  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  26690414 cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa 26690345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 26731725 - 26731656
Alignment:
Q  80 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa 149  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  26731725 cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa 26731656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 26694575 - 26694506
Alignment:
Q  80 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa 149  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||| | ||||||||||||    
T  26694575 cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaagttcagcaagaaa 26694506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 47193485 - 47193355
Alignment:
Q  46 tactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaa 145  Q
    |||||||| |||||||  ||||| || ||||||||||||||||||||||| ||||| || ||||| ||||| | | | |||||  |||||| |||||| |    
T  47193485 tactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagcta 47193386  T
Q  146 gaaactctccttccccttgattagcttcatt 176  Q
    |||| ||  |||| || |||| |||||||||    
T  47193385 gaaattcagcttctccctgatgagcttcatt 47193355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 9792585 - 9792530
Alignment:
Q  46 tactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaat 101  Q
    |||||||| ||||||| |||||  || ||||||||||||||||||||||| |||||    
T  9792585 tactcataaaccaaaagtctatttttcccttcaacacaatatccccacatatcaat 9792530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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