View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2335_low_3 (Length: 616)
Name: NF2335_low_3
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 13 - 601
Target Start/End: Complemental strand, 28551170 - 28550581
Alignment:
| Q |
13 |
attatactcgagtcatcgtaatctattgaaccgtatgaatatctcgtgtaagattatcacctgtgaaaagagatcatgtcttatgtgcaagaatgagtct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28551170 |
attatactcgagtcatcgtaatctattgaaccgtatgaatatctcgtgtaagattatcacctgtgaaaagagatcatgtcttatgtgcaagaatgagtct |
28551071 |
T |
|
| Q |
113 |
acgaacgatccaacaagacaaccatctgggatcttagaggaaattcgcaattggcgtgaagatgagatagagtctctagcacattaattcagttttattg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28551070 |
acgaacgatccaacaagacaaccatctgggatcttagaggaaattcgcaattggcgtgaagatgagatagattctctagcacattaattcagttttattg |
28550971 |
T |
|
| Q |
213 |
aaatgtgtttaatatggcatgaaccttgtgatttttaaacatcaataatacttcactttcctttttgttgggacggtgcatgtgcatggcttgcagtttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28550970 |
aaatgtgtttaatatggcatgaaccttgtgatttttaaacatcaataatacttcactttcctttttgttgggacggtgcatgtgcatggcttgcagtttt |
28550871 |
T |
|
| Q |
313 |
ctagtcttatgggtatatattgagaaatacaatagtcttttaaagtattgcagtaaatgataattatatggtgttttgtcttttaaagtattgattaagc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28550870 |
ctagtcttatgggtatatattgagaaatacaatagtcttttaaagtattgcagtaaatgataattatatggtgttttgtcttttaaagtattgattaagc |
28550771 |
T |
|
| Q |
413 |
tttcagtttagagcagtaa-tccnnnnnnnnaagcaaaaatattttatctaaaccattgcaaaactgcattaagaggataaagccaaaaagtaatactcc |
511 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28550770 |
tttcagtttagagcagtaattctttttttttaagtaaaaatattttatctaaaccattgcaaaactgcattaagaggataaagccaaaaagtaatactcc |
28550671 |
T |
|
| Q |
512 |
agggacaccaaaagtaactcctctgctacgtgtaccaaaataccaacagaaaccaaaacacatttactcccttcccttacctcaccaaaa |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28550670 |
agggacaccaaaagtaactcctctgctacgtgtaccaaaataccaacagaaaccaaaacacatttactcccttcccttacctcaccaaaa |
28550581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University