View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2335_low_35 (Length: 238)
Name: NF2335_low_35
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_35 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 659583 - 659639
Alignment:
| Q |
129 |
ggtcatcgaaccgccaaggtcatgggttcacatgttcatcggtcaaaccacatgatt |
185 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
659583 |
ggtcatcaaaccgccaaggtcatgggttcacatgttcatcggtcaaaccacaggatt |
659639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 659944 - 659984
Alignment:
| Q |
183 |
atttctcactaagatgaaggtttaagaaaaaggaagttagt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
659944 |
atttctcactaagatgaaggtttaagaaaaaggaagttagt |
659984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University