View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_low_38 (Length: 229)
Name: NF2335_low_38
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 7278895 - 7278708
Alignment:
| Q |
15 |
aatatgaaagatcttttagttttaaggcaagatattagtaaactcatgttctgagatcttatcatcaatgagttctcaaagattgtggttttttatagct |
114 |
Q |
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| T |
7278895 |
aatatgaaagatcttttggttttaaggcaagatattagtaaactcatgttctgagatcatatcagcaatgtgttctcaaagattgtggtttct-atagct |
7278797 |
T |
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| Q |
115 |
gagtcattagtaaacctaatttcattatccaatggtaaactcatcaacattcttctttgcatagtctgttattgaagtaaatttttggt |
203 |
Q |
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| T |
7278796 |
gagtcattagtaaacttaatttcattatccaatggtaaactcatcaacattcttctttgcatagtcagttattgaaggaaatttttggt |
7278708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 18173715 - 18173599
Alignment:
| Q |
86 |
gttctcaaagattgtggttttttatagctgagtcattagtaaacctaatttcattatccaatggtaaactcatcaacattcttctttgcatagtctgtta |
185 |
Q |
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| T |
18173715 |
gttctcaaagattgtggttttt-atagccaacttattagtaaacttaatttgattatccaatggtaaactcatcaacattcttctttgaatagtctgtta |
18173617 |
T |
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| Q |
186 |
ttgaagtaaatttttggt |
203 |
Q |
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| T |
18173616 |
ttgaagtaagtttttggt |
18173599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 18226086 - 18226202
Alignment:
| Q |
86 |
gttctcaaagattgtggttttttatagctgagtcattagtaaacctaatttcattatccaatggtaaactcatcaacattcttctttgcatagtctgtta |
185 |
Q |
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| T |
18226086 |
gttctcaaagattgtggttttt-atagccaacttattagtaaacttaatttgattatccaatggtaaactcatcaacattcttctttgaatagtctgtta |
18226184 |
T |
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| Q |
186 |
ttgaagtaaatttttggt |
203 |
Q |
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||||||||| |||||||| |
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| T |
18226185 |
ttgaagtaagtttttggt |
18226202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 18173871 - 18173808
Alignment:
| Q |
15 |
aatatgaaagatcttttagttt-taaggcaagatattagtaaactcatgttctgagatcttatc |
77 |
Q |
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|||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |||| |
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| T |
18173871 |
aatatgaaagatctttaggtttataagacaagatattagtaaactcatgttctgagatcatatc |
18173808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 18225930 - 18225993
Alignment:
| Q |
15 |
aatatgaaagatcttttagttt-taaggcaagatattagtaaactcatgttctgagatcttatc |
77 |
Q |
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|||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |||| |
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| T |
18225930 |
aatatgaaagatctttaggtttataagacaagatattagtaaactcatgttctgagatcatatc |
18225993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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