View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_low_4 (Length: 531)
Name: NF2335_low_4
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 35445811 - 35445583
Alignment:
| Q |
10 |
ataattctaacatattcatgaatcaaacgaatctacttatacataacccgagttattaaatatgttttttaatctctatagttatctataattttactat |
109 |
Q |
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| T |
35445811 |
ataattctaacatattcatgaatcaaacgaatctacttatacataacccgagttattaaatatgttttt-aatctctatagttatctataattttactat |
35445713 |
T |
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| Q |
110 |
cagtccctccctatacccacttttcagtcccaacaaattatacatgacattgacatgcttttggtctataaagagggactaaaaacatgcaactttgtaa |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
35445712 |
cagtccctccctatactcacttttcagtcccaacaaattatacatgacattgacatacttttggtccataaagagggactaaaaacatgcaacattgtaa |
35445613 |
T |
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| Q |
210 |
cttgtagaaactaaaaagtaggtatagaga |
239 |
Q |
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| T |
35445612 |
cttgtagaaactaaaaagtaggtatagaga |
35445583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 304 - 514
Target Start/End: Complemental strand, 35445502 - 35445292
Alignment:
| Q |
304 |
gttttgctcatttgattcatgaaccaagctggacaaataaattgcctaattgagtctctaatgctcaaactaattttgagttgtgttttgttcattttta |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445502 |
gttttgctcatttgattcatgaaccaagctggacaaataaattgcctaattgagtctctaatgctcaaactaattttgagttgtgttttgttcattttta |
35445403 |
T |
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| Q |
404 |
gcattaatggatagggcagttatgtatagatgctataaaaggaaagaaaactgaaaaatgaagtttgcgtaatatatcatacatggtaagatagagagat |
503 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445402 |
gcattaatggatagggcagttgtgtatagatgctataaaaggaaagaaaactgaaaaatgaagtttgcgtaatatatcatacatggtaagatagagagat |
35445303 |
T |
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| Q |
504 |
gtatgtatttt |
514 |
Q |
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|| |||||||| |
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| T |
35445302 |
gtgtgtatttt |
35445292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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