View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_low_43 (Length: 219)
Name: NF2335_low_43
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 24890188 - 24890376
Alignment:
| Q |
3 |
atccatgcatcggtgtgaactacgtactttgacatgttattttagcacaaaaataggaatgttattttattcataaagagttgaaaattgtcttcgcgta |
102 |
Q |
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| T |
24890188 |
atccatgcatcggtgtgaactacgtactttgacatgttattt-agcacaaaaataggaatgttattttattcataaagagttgaaaattgtcttcgcgta |
24890286 |
T |
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| Q |
103 |
agt----acattcaacaaggctaaaatgtgtattgcaacactttcctacggtaaaaaataaaacatatttcatttctaataaagtggatg |
188 |
Q |
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| T |
24890287 |
agtccgtacattcaacaaggctaaaatgtgtattgcaacactttcctacggtaaaaaataaaacatatttcatttctaataaagtggatg |
24890376 |
T |
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