View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2335_low_6 (Length: 512)

Name: NF2335_low_6
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2335_low_6
NF2335_low_6
[»] chr3 (13 HSPs)
chr3 (1-319)||(9995344-9995663)
chr3 (1-319)||(10358886-10359207)
chr3 (1-319)||(48388050-48388366)
chr3 (115-319)||(10216529-10216733)
chr3 (115-319)||(10105381-10105585)
chr3 (115-319)||(10226141-10226345)
chr3 (115-319)||(10220046-10220252)
chr3 (1-149)||(10131188-10131336)
chr3 (401-494)||(9995134-9995227)
chr3 (401-494)||(10359319-10359412)
chr3 (402-464)||(48388469-48388531)
chr3 (317-373)||(9995257-9995313)
chr3 (326-373)||(10359244-10359291)
[»] chr5 (3 HSPs)
chr5 (115-319)||(26796000-26796204)
chr5 (115-319)||(26799517-26799722)
chr5 (115-319)||(26807066-26807272)
[»] chr1 (2 HSPs)
chr1 (202-288)||(3765792-3765878)
chr1 (403-447)||(3765997-3766041)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 9995663 - 9995344
Alignment:
Q  1 gccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9995663 gccacaccgtgtccaggaatgaatctagtattttcttcggtgtatacgagttttgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaaa 9995564  T
Q  101 catttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  9995563 catttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcacgaaagcgtctt 9995464  T
Q  201 gttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattc-nnnnnnnnattcttttgtccatttcctcggaacaaat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  9995463 gttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattctttttttttattcttttgtccatttcctcggaacaaat 9995364  T
Q  300 gaattatggttggtctgaag 319  Q
    ||||||||||||||||||||    
T  9995363 gaattatggttggtctgaag 9995344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 10358886 - 10359207
Alignment:
Q  1 gccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10358886 gccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaaa 10358985  T
Q  101 catttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  10358986 catttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattacgaaaaagaaatattgtacttacattcgcgaaagagtctt 10359085  T
Q  201 gttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattc--nnnnnnnnattcttttgtccatttcctcggaac-aa 297  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||          ||||||||||||||||||||||||| ||    
T  10359086 gttcatggtggtagatgaatggaaccagtcaccagttagatacagcaattctccatttattcttttttttttattcttttgtccatttcctcggaacaaa 10359185  T
Q  298 atgaattatggttggtctgaag 319  Q
    ||||||||||||||||||||||    
T  10359186 atgaattatggttggtctgaag 10359207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 48388050 - 48388366
Alignment:
Q  1 gccacaccgtgtccaggaatgaatctagtattttcttcggtgtacac--gagtttcgttctgaagcctgaaacaaatataatgttggtgtcgatgtccta 98  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||  ||||||| |||||||||||||||||||||   | |||||||| |  ||| |    
T  48388050 gccacaccgtgtccaggaatgaatctagcattttcttcagtgtacacatgagtttcattctgaagcctgaaacaaataagcttttggtgtcaagttccaa 48388149  T
Q  99 aacatttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtc 198  Q
    ||||||    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |||||||  | |||||||||||    
T  48388150 aacatt----tgagtgagaatgttgatatcataatcagagttcttcattgaaatgtgaattgcaaaaaagaaatattgtacttacgattgcgaaagagtc 48388245  T
Q  199 ttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcggaacaaa 298  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| |||| ||    
T  48388246 ttgttcatggtggtagatgagtggaaccagtcaccagttagatagagcaattctccatttattctttctttgattcttttgtccatttcctcagaaccaa 48388345  T
Q  299 tgaattatggttggtctgaag 319  Q
    ||||| |||||||||||||||    
T  48388346 tgaataatggttggtctgaag 48388366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 10216733 - 10216529
Alignment:
Q  115 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttgttcatggtggtag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  10216733 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaagagtattgttcatggtggtag 10216634  T
Q  215 atgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttggtc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  10216633 atgaatggaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcggaacaaatgaattatggttggtc 10216534  T
Q  315 tgaag 319  Q
    |||||    
T  10216533 tgaag 10216529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 10105585 - 10105381
Alignment:
Q  115 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttgttcatggtggtag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  10105585 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaagagtattgttcatggtggtag 10105486  T
Q  215 atgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttggtc 314  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  10105485 atgaatgaaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcggaacaaatgaattatggttggtc 10105386  T
Q  315 tgaag 319  Q
    |||||    
T  10105385 tgaag 10105381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 10226345 - 10226141
Alignment:
Q  115 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttgttcatggtggtag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  10226345 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgtgaaaaagaaatgttgtacttacattcgcgaaagagtattgttcatggtggtag 10226246  T
Q  215 atgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttggtc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  10226245 atgaatggaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcggaacaaatgaattatggttggtc 10226146  T
Q  315 tgaag 319  Q
    |||||    
T  10226145 tgaag 10226141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 10220252 - 10220046
Alignment:
Q  115 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaa-gaaatattctacttacattcgcgaaagagtcttgttcatggtggta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||||||||||    
T  10220252 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaaagaaatattgtactgacattcgcgaaagagtattgttcatggtggta 10220153  T
Q  214 gatgaatggaaccagtcaccagttagatagagcaattctcca-tttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttgg 312  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||         ||||||||||||||||||||||||||||||||||||||||||    
T  10220152 gatgaatggaaccagtcaccagttagatagagcaattctccatttttttattttttttattcttttgtccatttcctcggaacaaatgaattatggttgg 10220053  T
Q  313 tctgaag 319  Q
    |||||||    
T  10220052 tctgaag 10220046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10131336 - 10131188
Alignment:
Q  1 gccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  10131336 gccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttatgaagcctgaaacaaatataatgttggtgtcgatgttctaaa 10131237  T
Q  101 catttaagtgagttagaatgttgatatcatagtcagagttcttcattga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10131236 catttaagtgagttagaatgttgatatcatagtcagagttcttcattga 10131188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 401 - 494
Target Start/End: Complemental strand, 9995227 - 9995134
Alignment:
Q  401 attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacatttggttacacaaacgttacaaagtcttcat 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9995227 attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacatttgattacacaaacgttacaaagtcttcat 9995134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 401 - 494
Target Start/End: Original strand, 10359319 - 10359412
Alignment:
Q  401 attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacatttggttacacaaacgttacaaagtcttcat 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10359319 attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacatttggttacacaaatgttacaaagtcttcat 10359412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 402 - 464
Target Start/End: Original strand, 48388469 - 48388531
Alignment:
Q  402 ttaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacat 464  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48388469 ttaccataacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacat 48388531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 9995313 - 9995257
Alignment:
Q  317 aagtacttgttgtaaaaaatagttgatgacaactgagttatactacaacacaaacaa 373  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9995313 aagtacttgttgtaaaaaatagttgatgacaagtgagttatactacaacacaaacaa 9995257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 10359244 - 10359291
Alignment:
Q  326 ttgtaaaaaatagttgatgacaactgagttatactacaacacaaacaa 373  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  10359244 ttgtaaaaaatagttgatgataactgagttatactacaacacaaacaa 10359291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 26796204 - 26796000
Alignment:
Q  115 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttgttcatggtggtag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  26796204 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaagagtattgttcatggtggtag 26796105  T
Q  215 atgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttggtc 314  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  26796104 atgaatgaaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcggaacaaatgaattatggttggtc 26796005  T
Q  315 tgaag 319  Q
    |||||    
T  26796004 tgaag 26796000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 26799722 - 26799517
Alignment:
Q  115 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttgttcatggtggtag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  26799722 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaagagtattgttcatggtggtag 26799623  T
Q  215 atgaatggaaccagtcaccagttagatagagcaattctcca-tttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttggt 313  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||         |||||||||||||||||||||||||||||||||||||||||||    
T  26799622 atgaatggaaccagtcaccagttagatagagcaattctccatttttttattttttttattcttttgtccatttcctcggaacaaatgaattatggttggt 26799523  T
Q  314 ctgaag 319  Q
    ||||||    
T  26799522 ctgaag 26799517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 26807272 - 26807066
Alignment:
Q  115 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaa-gaaatattctacttacattcgcgaaagagtcttgttcatggtggta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||||||||||    
T  26807272 agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaaagaaatattgtactgacattcgcgaaagagtattgttcatggtggta 26807173  T
Q  214 gatgaatggaaccagtcaccagttagatagagcaattctcca-tttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttgg 312  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||         ||||||||||||||||||||||||||||||||||||||||||    
T  26807172 gatgaatggaaccagtcaccagttagatagagcaattctccatttttttattttttttattcttttgtccatttcctcggaacaaatgaattatggttgg 26807073  T
Q  313 tctgaag 319  Q
    |||||||    
T  26807072 tctgaag 26807066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 3765792 - 3765878
Alignment:
Q  202 ttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcc 288  Q
    |||||| |||||||||||||||||||  |||||  ||| |||||||||| ||| |||||||        ||||||||||||||||||    
T  3765792 ttcatgatggtagatgaatggaaccaagcaccatctaggtagagcaattttccttttattctttcttcaattcttttgtccatttcc 3765878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 3765997 - 3766041
Alignment:
Q  403 taccaaaacccatccccaagtatcagcaaaagatggtacatgagt 447  Q
    ||||| |||||||||||| | ||||||||| ||||||||||||||    
T  3765997 taccataacccatccccatgaatcagcaaatgatggtacatgagt 3766041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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