View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2335_low_7 (Length: 485)

Name: NF2335_low_7
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2335_low_7
NF2335_low_7
[»] chr2 (21 HSPs)
chr2 (11-421)||(3949927-3950338)
chr2 (62-421)||(40113335-40113710)
chr2 (151-421)||(23888338-23888609)
chr2 (151-421)||(23892414-23892685)
chr2 (151-421)||(24138311-24138582)
chr2 (151-388)||(41826523-41826752)
chr2 (210-421)||(18341573-18341784)
chr2 (152-364)||(15144208-15144420)
chr2 (75-421)||(669939-670293)
chr2 (219-421)||(39190035-39190237)
chr2 (171-377)||(662751-662952)
chr2 (264-380)||(25336147-25336263)
chr2 (208-419)||(17527310-17527524)
chr2 (209-333)||(14661277-14661401)
chr2 (210-350)||(17530028-17530171)
chr2 (246-420)||(33425851-33426024)
chr2 (94-151)||(39190308-39190364)
chr2 (358-421)||(14661214-14661277)
chr2 (100-142)||(4840443-4840484)
chr2 (114-143)||(662990-663019)
chr2 (210-246)||(450498-450534)
[»] chr6 (16 HSPs)
chr6 (73-397)||(32932179-32932503)
chr6 (157-421)||(18338039-18338305)
chr6 (157-420)||(23848518-23848781)
chr6 (152-421)||(9972700-9972972)
chr6 (157-413)||(7553362-7553620)
chr6 (151-320)||(27101529-27101698)
chr6 (151-320)||(27143351-27143520)
chr6 (209-421)||(22958084-22958286)
chr6 (209-421)||(23830106-23830308)
chr6 (210-415)||(15121532-15121730)
chr6 (209-318)||(19543490-19543599)
chr6 (76-142)||(27101728-27101794)
chr6 (76-142)||(27143550-27143616)
chr6 (367-421)||(19543424-19543478)
chr6 (365-421)||(27101459-27101515)
chr6 (365-421)||(27143281-27143337)
[»] chr3 (20 HSPs)
chr3 (157-421)||(3469778-3470042)
chr3 (157-421)||(19240464-19240728)
chr3 (159-421)||(31112306-31112564)
chr3 (151-421)||(32280714-32280986)
chr3 (151-421)||(32285658-32285930)
chr3 (209-421)||(39032745-39032956)
chr3 (209-417)||(29960923-29961131)
chr3 (209-417)||(30010128-30010336)
chr3 (209-421)||(39039758-39039968)
chr3 (157-421)||(45677835-45678101)
chr3 (206-421)||(38445572-38445787)
chr3 (208-421)||(41272891-41273104)
chr3 (281-421)||(11172085-11172225)
chr3 (208-366)||(46611799-46611957)
chr3 (206-421)||(50158101-50158316)
chr3 (232-377)||(10626314-10626459)
chr3 (210-341)||(11458138-11458269)
chr3 (345-421)||(11457260-11457334)
chr3 (42-151)||(41273168-41273275)
chr3 (209-271)||(39350935-39350997)
[»] chr7 (9 HSPs)
chr7 (151-421)||(48853526-48853797)
chr7 (171-421)||(267707-267956)
chr7 (151-421)||(32517044-32517317)
chr7 (42-421)||(26450742-26451128)
chr7 (274-421)||(278876-279023)
chr7 (216-421)||(40771648-40771851)
chr7 (207-376)||(29148714-29148882)
chr7 (290-421)||(40771166-40771295)
chr7 (215-377)||(5172840-5173002)
[»] scaffold0502 (2 HSPs)
scaffold0502 (157-421)||(8863-9129)
scaffold0502 (157-384)||(4200-4429)
[»] chr8 (16 HSPs)
chr8 (151-421)||(32038048-32038319)
chr8 (151-421)||(44626049-44626319)
chr8 (226-421)||(1262246-1262441)
chr8 (157-421)||(26005484-26005751)
chr8 (42-421)||(45265965-45266332)
chr8 (41-189)||(27146-27289)
chr8 (151-340)||(17497454-17497643)
chr8 (276-401)||(18324740-18324865)
chr8 (152-325)||(34548032-34548210)
chr8 (151-415)||(38143818-38144076)
chr8 (210-363)||(39517326-39517480)
chr8 (305-376)||(45272805-45272876)
chr8 (208-257)||(18324939-18324988)
chr8 (195-257)||(38151018-38151080)
chr8 (356-421)||(34548212-34548277)
chr8 (383-421)||(17497646-17497684)
[»] chr1 (12 HSPs)
chr1 (151-420)||(39574422-39574690)
chr1 (208-421)||(24515354-24515564)
chr1 (211-421)||(41140800-41141010)
chr1 (152-421)||(47858034-47858304)
chr1 (209-421)||(9764978-9765189)
chr1 (147-370)||(9758299-9758523)
chr1 (210-377)||(12017733-12017899)
chr1 (157-327)||(39581064-39581233)
chr1 (276-370)||(24523172-24523266)
chr1 (331-421)||(39580437-39580527)
chr1 (331-421)||(47854650-47854740)
chr1 (295-363)||(38278914-38278983)
[»] chr4 (18 HSPs)
chr4 (158-421)||(42567597-42567859)
chr4 (209-421)||(6262131-6262343)
chr4 (183-421)||(35904965-35905202)
chr4 (171-421)||(24423168-24423417)
chr4 (210-421)||(36048816-36049027)
chr4 (210-421)||(2228783-2228994)
chr4 (176-421)||(18891074-18891318)
chr4 (220-421)||(33366681-33366885)
chr4 (264-421)||(54256170-54256325)
chr4 (208-421)||(13393676-13393890)
chr4 (208-421)||(13396815-13397029)
chr4 (213-377)||(44160724-44160887)
chr4 (264-421)||(33361565-33361722)
chr4 (310-421)||(43444831-43444942)
chr4 (323-413)||(18888167-18888257)
chr4 (62-142)||(13393495-13393578)
chr4 (62-142)||(13396634-13396717)
chr4 (209-257)||(54256348-54256396)
[»] chr5 (6 HSPs)
chr5 (157-418)||(22729762-22730023)
chr5 (226-421)||(36950150-36950345)
chr5 (152-421)||(35941063-35941324)
chr5 (208-421)||(43097372-43097585)
chr5 (62-401)||(11339771-11340121)
chr5 (276-421)||(10491122-10491267)
[»] scaffold1634 (1 HSPs)
scaffold1634 (206-421)||(26-241)
[»] scaffold0040 (2 HSPs)
scaffold0040 (151-421)||(67701-67974)
scaffold0040 (151-421)||(60225-60498)
[»] scaffold0045 (1 HSPs)
scaffold0045 (210-421)||(30009-30220)
[»] scaffold0062 (1 HSPs)
scaffold0062 (210-421)||(40145-40356)
[»] scaffold0027 (1 HSPs)
scaffold0027 (210-421)||(134550-134761)
[»] scaffold1074 (1 HSPs)
scaffold1074 (58-131)||(97-169)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 3950338 - 3949927
Alignment:
Q  11 aaaatatattatccatttcccatgaggaaggtgataaaagtttatagattcagccatagttcaatagatacaagttataacatatcactaataaagaagg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||    
T  3950338 aaaatatatcatccatttcccatgaggaaggtgataaaagtttatagattcagccatagatcaatagatataagttataacatatcagtaataaagaagg 3950239  T
Q  111 gaataagaaattgtgtacctttgaattaggttgacgaaggagaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3950238 gaataagaaattgtgtacctttgaattaggttgacgaaggagaagaatgagagggatgactaccctcattccgtttagcaccataaatgtttatagtagt 3950139  T
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattta 309  Q
    ||| |||||| |||| ||||| |||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3950138 ttatccgtctcatgggatgacgtttaaatagttaaacggctgagggcaaggacctctcattgggcttagctaaatggtctaacccatcacggtccattta 3950039  T
Q  310 gaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatta 409  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||     
T  3950038 gaaagaatagttcaatcacacatatttatcaattaattagtgcttgacacaatagactataatttatattatgacattaacttataataattgattattg 3949939  T
Q  410 tcaatccataat 421  Q
    ||||||||||||    
T  3949938 tcaatccataat 3949927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 62 - 421
Target Start/End: Complemental strand, 40113710 - 40113335
Alignment:
Q  62 agccatagttcaatagatacaagttataacatatcactaataaagaagggaataagaaattgtgtacctttga-attagg--ttgacgaaggaga----- 153  Q
    |||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||| ||| | |||  |  || | |||||| |         
T  40113710 agccataaatcaatagatacaagttatagcatatcaataataaagaagggaataagagattgtatacatttaagattcagaattcaagaaggatagctct 40113611  T
Q  154 --agaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatgga----atgacatttaaatagttaaac 246  Q
      || |||||||||||||| |||||||||||||||||||||| || |||| | | |||||||||||| ||||| |    ||||| ||||||||| |||||    
T  40113610 caaggatgagagggatgactaccctcattccgtttagcaccagaa-tgttcagaatagtttaaccgtttgatgcatgggatgacgtttaaatagctaaac 40113512  T
Q  247 gactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaat 346  Q
      |||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  40113511 agctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttaaaaagaatagctcaatcacacatattcatcaactaat 40113412  T
Q  347 --tagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
      |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  40113411 tatagtgcttaacacaatagaccataatttatattatgacattaacttataataattaattattgtcaatccataat 40113335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 151 - 421
Target Start/End: Original strand, 23888338 - 23888609
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| ||||||| |||||| ||||||||||||| |||||| | ||   || | | ||||||||||||||| ||| ||||| ||||||||| |||||| |    
T  23888338 agaaggatgagagagatgactaccctcattccgtgtagcactagaagaattcacaatagtttaaccgtctggtgggatgacgtttaaatagctaaacggc 23888437  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattag 349  Q
    ||||||||  ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||    
T  23888438 tgagggcagggacctctcattgggattagctaaatggtccaacccatcacggtccatttagaaagaatagtccgatcatacatattcatcaactaatgag 23888537  T
Q  350 tgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  23888538 tgcttaatacaatagaccatattataaattataacattaatttataataattgattattgtcaatccataat 23888609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 151 - 421
Target Start/End: Original strand, 23892414 - 23892685
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| ||||||| |||||| ||||||||||||| |||||| | ||   || | | ||||||||||||||| ||| ||||| ||||||||| |||||| |    
T  23892414 agaaggatgagagagatgactaccctcattccgtgtagcactagaagaattcacaatagtttaaccgtctggtgggatgacgtttaaatagctaaacggc 23892513  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattag 349  Q
    ||||||||  ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||    
T  23892514 tgagggcagggacctctcattgggattagctaaatggtccaacccatcacggtccatttagaaagaatagtccgatcatacatattcatcaactaatgag 23892613  T
Q  350 tgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  23892614 tgcttaatacaatagaccatattataaattataacattaatttataataattgattattgtcaatccataat 23892685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 151 - 421
Target Start/End: Complemental strand, 24138582 - 24138311
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| ||||||| |||||| ||||||||||||| |||||||| ||  ||| | | || |||||||||||||||| ||||| ||||||||| |||||| |    
T  24138582 agaaggatgagagagatgactaccctcattccgtgtagcaccagaagagttcagaatattttaaccgtctgatgggatgacgtttaaatagctaaacggc 24138483  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattag 349  Q
    ||||||||  ||| ||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||| ||    
T  24138482 tgagggcagggacctctcattggacttaactaaatggtccaacccatcacggtccatttaaaaagaataactcaatcatacatattcatcaactaatgag 24138383  T
Q  350 tgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  24138382 tgcttaatacaatagaccatattataaattataacattaatttataataattgattattgtcaatccataat 24138311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 151 - 388
Target Start/End: Complemental strand, 41826752 - 41826523
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| |||||||||||||| |||||||||||||||||||| |   ||||| | ||||||||||||||||||||| ||||| ||||||||| ||||||      
T  41826752 agaaggatgagagggatgactaccctcattccgtttagcacga---atgttcagagtagtttaaccgtctgatgggatgacgtttaaatagctaaacg-- 41826658  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattag 349  Q
        ||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  41826657 ----ggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttaaaaagaatagctcaatcaaacatattcatcaactaattag 41826562  T
Q  350 tgcttaacacaatagaccatagtttatattatgacatta 388  Q
    ||||||||||||||||||||| |||||| ||| ||||||    
T  41826561 tgcttaacacaatagaccataatttatactataacatta 41826523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 210 - 421
Target Start/End: Original strand, 18341573 - 18341784
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattta 309  Q
    ||||||||||||||| ||||| ||||||||| |||||   ||| ||||  ||| |||||||| |||||||||||||||| ||||||||||||||||| ||    
T  18341573 ttaaccgtctgatgggatgacgtttaaatagctaaacagttgaaggcagggacctctcattgagcttagctaaatggtccaacccatcacggtccatata 18341672  T
Q  310 gaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatta 409  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||     
T  18341673 gaaagaatagctcaatcacacatattcatcatctaattagtgcttaacacaatagatcataatttatattatgacattaacttataataattaattattg 18341772  T
Q  410 tcaatccataat 421  Q
    | ||||||||||    
T  18341773 tgaatccataat 18341784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 152 - 364
Target Start/End: Original strand, 15144208 - 15144420
Alignment:
Q  152 gaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgact 250  Q
    |||| |||||| ||||||| |||||||||||||||||||||| || |||||| | |||||||||| |||||||| ||||||||||||||| |||||| ||    
T  15144208 gaaggatgagacggatgactaccctcattccgtttagcaccagaa-tgtttagaatagtttaaccatctgatgggatgacatttaaatagctaaacggct 15144306  T
Q  251 gagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagt 350  Q
    |||||||  ||  ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  15144307 gagggcagggatctctcattgggcttagttaaatggtccaactcatcacggtccatttagaaagaatagcacaatcacacatattcatcaactaattagt 15144406  T
Q  351 gcttaacacaatag 364  Q
    ||||||||||||||    
T  15144407 gcttaacacaatag 15144420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 75 - 421
Target Start/End: Complemental strand, 670293 - 669939
Alignment:
Q  75 tagatacaagttataacatatcac---taataaagaagggaataagaaattgtgtacctttgaattaggttgacgaa---------ggagaagaatgaga 162  Q
    ||||||||||||||| |||||||    ||||||||||   ||||||||||||||||||||| ||||||||||  |||           ||| | ||||||    
T  670293 tagatacaagttatagcatatcatcgataataaagaaaaaaataagaaattgtgtacctttaaattaggttggtgaaacataattgtcagacggatgaga 670194  T
Q  163 gggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatga 261  Q
    |||||||| ||||||||||||||||||||||  ||| || | | || |||||    ||||||| ||||| ||||||||| | |||| |||||||||   |    
T  670193 gggatgactaccctcattccgtttagcacca-gaatattcagaataatttaa----ctgatgggatgacgtttaaatagctgaacggctgagggcatgaa 670099  T
Q  262 catctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaa 361  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  670098 cctctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagatcaatcacacatattcatcaagtaattagtgcttaacacaa 669999  T
Q  362 tagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||| | ||||||  || | ||||  ||||||||||| |||||| ||||||||||||    
T  669998 tagaccacaatttataaaataatattaatttataataattgattattgtcaatccataat 669939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 219 - 421
Target Start/End: Complemental strand, 39190237 - 39190035
Alignment:
Q  219 tgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaata 318  Q
    |||||| ||||| |||| |||| |||||| |||||||||  ||| ||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||    
T  39190237 tgatgggatgacgtttacatagctaaacggctgagggcagggacctctcattggacttagctaaatggtccaacccatcacggtccatttagtaacaata 39190138  T
Q  319 gttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccat 418  Q
    |  ||||||  ||||||||||||||||||| || |||||||||||||||||| |||||||||| | |||| || ||||||||| |||||| |||||||||    
T  39190137 gcccaatcactcatattcatcaactaattaatgtttaacacaatagaccataatttatattataagattaactcataataattgattattgtcaatccat 39190038  T
Q  419 aat 421  Q
    |||    
T  39190037 aat 39190035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 171 - 377
Target Start/End: Complemental strand, 662952 - 662751
Alignment:
Q  171 accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcatt 270  Q
    |||||||||||||||||||||| |  | || | | ||||||||||||    ||| ||||| ||||||||| | |||||||||||||| |||| |||||||    
T  662952 accctcattccgtttagcaccagac-tattcagaatagtttaaccgt----tgggatgacgtttaaatagctgaacgactgagggcagtgacctctcatt 662858  T
Q  271 gggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccata 370  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |||| |    
T  662857 ggacttagctaaatggtccaacccatcacggtccatttagaaagaatagctcaatcacacatattcatcaagtaattagtgtttaacacaataaaccaca 662758  T
Q  371 gtttata 377  Q
     ||||||    
T  662757 atttata 662751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 264 - 380
Target Start/End: Complemental strand, 25336263 - 25336147
Alignment:
Q  264 tctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaata 363  Q
    ||||||| | |||| |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  25336263 tctcattagacttaactaaatggttcaacccatcacggtccatttagaaagaatagttcaatcacacatattcatcaactaattagtgcttaacacaaca 25336164  T
Q  364 gaccatagtttatatta 380  Q
    |||||||||||||||||    
T  25336163 gaccatagtttatatta 25336147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 208 - 419
Target Start/End: Original strand, 17527310 - 17527524
Alignment:
Q  208 gtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatt 307  Q
    |||||||||||||| |  || || ||||||||| |||||   |||| |||  ||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  17527310 gtttaaccgtctgacgcgataacgtttaaatagctaaactgttgagagcagggacctctcattgggcttagctaaatagtccaacccatcacggtccatt 17527409  T
Q  308 tagaaagaatagttcaatcatacatattcatcaactaat---tagtgcttaacacaataga-ccatagtttatattatgacattagcttataataattta 403  Q
    |||||||||| |  |||||| ||||||||||||||||||   ||||||||||||||||| | |||||   |||| ||| | |||| |||||||||||| |    
T  17527410 tagaaagaatggcccaatcacacatattcatcaactaattagtagtgcttaacacaataaacccata-aatataatataatattaacttataataattga 17527508  T
Q  404 ttattatcaatccata 419  Q
    ||||| ||||||||||    
T  17527509 ttattgtcaatccata 17527524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 209 - 333
Target Start/End: Complemental strand, 14661401 - 14661277
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    |||||||||||||||| ||||| ||||||||| |||||| ||||| |||  ||| || ||||| |||||||||||||||| |||||||||||||||||||    
T  14661401 tttaaccgtctgatgggatgacgtttaaatagctaaacggctgagagcagggacctcccattgagcttagctaaatggtccaacccatcacggtccattt 14661302  T
Q  309 agaaagaatagttcaatcatacata 333  Q
    | |||||||||| ||||||||||||    
T  14661301 aaaaagaatagtccaatcatacata 14661277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 210 - 350
Target Start/End: Original strand, 17530028 - 17530171
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcac---ggtccat 306  Q
    ||||||||||||||| ||||| || |||||| |||||| ||||| ||| |||| |||||||||| |||||||||||||| ||||||||||   |||||||    
T  17530028 ttaaccgtctgatgggatgacgttgaaatagctaaacggctgagcgcagtgacctctcattgggtttagctaaatggtccaacccatcacggtggtccat 17530127  T
Q  307 ttagaaagaatagttcaatcatacatattcatcaactaattagt 350  Q
    ||| |||||||    |||||| ||||||||||||||||||||||    
T  17530128 ttaaaaagaatgacacaatcacacatattcatcaactaattagt 17530171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 420
Target Start/End: Complemental strand, 33426024 - 33425851
Alignment:
Q  246 cgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaa 345  Q
    |||||||||| |  ||| |||||||| |||||||||||| ||| |||| |||| | ||||||||||||  |||   |||| | |||||||||||| ||||    
T  33426024 cgactgagggtagggacctctcattgagcttagctaaatagtcaaacctatcatgatccatttagaaactataacacaattacacatattcatcatctaa 33425925  T
Q  346 ttagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataa 420  Q
    || ||| ||||||||||| | |||| |||||||||  | |||| | |||||||||| |||||| |||||||||||    
T  33425924 ttcgtgtttaacacaatacatcataatttatattaaaagattaac-tataataattgattattgtcaatccataa 33425851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 39190364 - 39190308
Alignment:
Q  94 atcactaataaagaagggaataagaaattgtgtacctttgaattaggttgacgaagga 151  Q
    |||| |||||||||||| ||  ||||||||||||||||||||||||||||| ||||||    
T  39190364 atcaataataaagaagg-aaggagaaattgtgtacctttgaattaggttgatgaagga 39190308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 421
Target Start/End: Complemental strand, 14661277 - 14661214
Alignment:
Q  358 acaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  14661277 acaatagaccatattataaattataacattaatttataataattgattattgtcaatccataat 14661214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 4840443 - 4840484
Alignment:
Q  100 aataaagaagggaataagaaattgtgtacctttgaattaggtt 142  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  4840443 aataaagaagg-aagaagaaattgtgtacctttgaattaggtt 4840484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 663019 - 662990
Alignment:
Q  114 taagaaattgtgtacctttgaattaggttg 143  Q
    ||||||||||||||||||||||||||||||    
T  663019 taagaaattgtgtacctttgaattaggttg 662990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 450498 - 450534
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaac 246  Q
    |||||||||||||||| |||||||||||||| |||||    
T  450498 ttaaccgtctgatggagtgacatttaaatagctaaac 450534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 73 - 397
Target Start/End: Original strand, 32932179 - 32932503
Alignment:
Q  73 aatagatacaagttataacatatcactaataaagaagggaataagaaattgtgtacctttgaattaggttgacgaaggagaagaatgagagggatgac-a 171  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  32932179 aatagatacaagttataacatatcagtaataaagaagggaataagaaattgtgtacctttgaattaggttgacgaaagagaagaatgagagggatgacta 32932278  T
Q  172 ccctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattg 271  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||  ||  ||||||||    
T  32932279 ccctcattccatttagcacca-aaatgttcatagtagtttaaccgtctgatgggatgacgtttaaatagttaaacgactgagggcagagatctctcattg 32932377  T
Q  272 ggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatag 371  Q
    |||| | |||||||||| ||| |||||| | ||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||     
T  32932378 ggctcaactaaatggtccaacacatcacagcccatttagaaagaatagctcaatcacacatattcatcaattaattagtgtttaacacaatagaccataa 32932477  T
Q  372 tttatattatgacattagcttataat 397  Q
    ||||||||||||||||| ||||||||    
T  32932478 tttatattatgacattaacttataat 32932503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 157 - 421
Target Start/End: Complemental strand, 18338305 - 18338039
Alignment:
Q  157 atgagagggatgac-accctcattccgtttagcaccataaatgttt-atagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagg 254  Q
    |||||||||||||| |||||||||||||||||||||| ||   ||| | | | ||||||||||||||||| ||||| ||||||||| |||||| ||||||    
T  18338305 atgagagggatgactaccctcattccgtttagcaccagaagaatttcagaatggtttaaccgtctgatgggatgacgtttaaatagctaaacggctgagg 18338206  T
Q  255 gcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgctt 354  Q
    |||  ||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||    
T  18338205 gcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatttagaaagaatagatcaatcacacatattcataaactaattagtgctt 18338106  T
Q  355 aacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||| |||||| ||||||||||||    
T  18338105 aacacaatagaccataatttatattatgactttaacttataataattgattattgtcaatccataat 18338039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 157 - 420
Target Start/End: Original strand, 23848518 - 23848781
Alignment:
Q  157 atgagagggatgacacc-ctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgaggg 255  Q
    ||||||||||||||  | |||||||| |||||||||| || |||| | | |||||||||| |||||||| ||||| ||||||||| |||||| || ||||    
T  23848518 atgagagggatgactgcgctcattccctttagcaccagaa-tgttcagaatagtttaaccatctgatgggatgacgtttaaatagctaaacggctaaggg 23848616  T
Q  256 caatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgctta 355  Q
    ||  ||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||     
T  23848617 cagggacctctcattgggcttagctaaatggttcaacccatcacggtccatttagaaagaatagtccaatcacacatattcatcaattaattagtgcttt 23848716  T
Q  356 acacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataa 420  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||    
T  23848717 acacaatagaccataatttatattatgacattaacttataataattgattattgtcaatccataa 23848781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 152 - 421
Target Start/End: Complemental strand, 9972972 - 9972700
Alignment:
Q  152 gaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatag---tagtttaaccgtctgatggaatgacatttaaatagttaaacg 247  Q
    |||| |||||||||||||| |||||||||||||||||||||| || |||| | |    ||||||||||||||||||| || || ||||||||| ||||||    
T  9972972 gaaggatgagagggatgactaccctcattccgtttagcaccagaa-tgttcagaagaatagtttaaccgtctgatgggataacgtttaaatagctaaacg 9972874  T
Q  248 actgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaatt 347  Q
     |||||||||  ||| ||||||||||||||||||||||||  |||||||||||||||||||||  |||||||  |||||||||||||||||||||||||     
T  9972873 gctgagggcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatttagttagaatagcccaatcatacatattcatcaactaatg 9972774  T
Q  348 agtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    | || |||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| |||||| |||||    
T  9972773 aatgtttaatacaatagaccatattataaattataacattaatttataataattgattattgtcaatctataat 9972700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 157 - 413
Target Start/End: Original strand, 7553362 - 7553620
Alignment:
Q  157 atgagagggatgac-accctcattccgtttagcacc--ataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgag 253  Q
    |||||||||||||| |||||||||||||||||||||  | ||||||| | | ||||||||||||||||||| ||||  ||||||||  |||||| | |||    
T  7553362 atgagagggatgactaccctcattccgtttagcacctgaaaaatgttcagaatagtttaaccgtctgatgggatgatgtttaaataactaaacggccgag 7553461  T
Q  254 ggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgct 353  Q
    ||||  ||| ||||| |||| |||||||||||||| ||||||||||| |||||||| |||||||||  |||||  ||||||||||| | |||||| ||||    
T  7553462 ggcagggacttctcactgggtttagctaaatggtccaacccatcacgatccatttaaaaagaatagcccaatcgcacatattcatc-attaattaatgct 7553560  T
Q  354 taacacaatagaccatagtttatattatgacattagcttataataatttattattatcaa 413  Q
    |||||| |||||||||| ||||||||||||||||| |||||||||||| |||||| ||||    
T  7553561 taacaccatagaccataatttatattatgacattaacttataataattgattattgtcaa 7553620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 151 - 320
Target Start/End: Complemental strand, 27101698 - 27101529
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| |||||||||||||| |||||||||||||||| ||||| || |||| | ||||||||||||||||||||| || |  ||||||||| ||||||||    
T  27101698 agaaggatgagagggatgactaccctcattccgtttaacaccagaa-tgttcagagtagtttaaccgtctgatgggataaagtttaaatagctaaacgac 27101600  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagt 320  Q
    ||||||||  |||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  27101599 tgagggcagggacatctcattgggcttaactaaatggttcaacccatcacggtccatttagaaagaatagt 27101529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 151 - 320
Target Start/End: Complemental strand, 27143520 - 27143351
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| |||||||||||||| |||||||||||||||| ||||| || |||| | ||||||||||||||||||||| || |  ||||||||| ||||||||    
T  27143520 agaaggatgagagggatgactaccctcattccgtttaacaccagaa-tgttcagagtagtttaaccgtctgatgggataaagtttaaatagctaaacgac 27143422  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagt 320  Q
    ||||||||  |||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  27143421 tgagggcagggacatctcattgggcttaactaaatggttcaacccatcacggtccatttagaaagaatagt 27143351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 209 - 421
Target Start/End: Original strand, 22958084 - 22958286
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    ||||||| |||||||| ||||| ||||||||| ||| || |||||||||  ||| |||||||||||||| |||||||||  |||||||||||||||||||    
T  22958084 tttaaccatctgatgggatgacgtttaaatagctaatcggctgagggcagggacttctcattgggcttaactaaatggttcaacccatcacggtccattt 22958183  T
Q  309 agaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatt 408  Q
    | ||||||||    ||||| |||| |||||||| ||||||||||||          |||||||||||||||||||||||| |||||||||||| ||||||    
T  22958184 aaaaagaataacctaatcacacattttcatcaattaattagtgctt----------accatagtttatattatgacattaacttataataattgattatt 22958273  T
Q  409 atcaatccataat 421  Q
     ||||||||||||    
T  22958274 gtcaatccataat 22958286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 209 - 421
Target Start/End: Complemental strand, 23830308 - 23830106
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    ||||||| |||||||| ||||| ||||||||| ||| || |||||||||  ||| |||||||||||||| |||||||||  |||||||||||||||||||    
T  23830308 tttaaccatctgatgggatgacgtttaaatagctaatcggctgagggcagggacttctcattgggcttaactaaatggttcaacccatcacggtccattt 23830209  T
Q  309 agaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatt 408  Q
    | ||||||||    ||||| |||| |||||||| ||||||||||||          |||||||||||||||||||||||| |||||||||||| ||||||    
T  23830208 aaaaagaataacctaatcacacattttcatcaattaattagtgctt----------accatagtttatattatgacattaacttataataattgattatt 23830119  T
Q  409 atcaatccataat 421  Q
     ||||||||||||    
T  23830118 gtcaatccataat 23830106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 210 - 415
Target Start/End: Original strand, 15121532 - 15121730
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattta 309  Q
    |||||||| |||||  |||||||||||||||||||||  |||||||||  ||| |       | ||||| ||||| ||| |||| ||||| |||||||||    
T  15121532 ttaaccgtatgatgagatgacatttaaatagttaaactgctgagggcagagacct-------gacttagttaaatcgtccaaccgatcacagtccattta 15121624  T
Q  310 gaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatta 409  Q
     ||| ||||  ||||||| ||||||||||||||||||||||  ||||||||||| |||||| ||||||||   | || | |||||||||||| ||||||     
T  15121625 taaacaataactcaatcacacatattcatcaactaattagttattaacacaatataccataatttatattgaaagatgaacttataataattgattattg 15121724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 19543599 - 19543490
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    |||||||||||||| | ||||| ||||||||| |||||| || ||||||  ||| ||||||| ||||||| ||||||||| |||||||||||| ||||||    
T  19543599 tttaaccgtctgataggatgacgtttaaatagctaaacggctaagggcagggacctctcattcggcttagttaaatggtccaacccatcacggcccattt 19543500  T
Q  309 agaaagaata 318  Q
    | ||||||||    
T  19543499 aaaaagaata 19543490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 27101794 - 27101728
Alignment:
Q  76 agatacaagttataacatatcactaataaagaagggaataagaaattgtgtacctttgaattaggtt 142  Q
    |||||||||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||||||||    
T  27101794 agatacaagttatagcatatcagtagtaaagaatggaataaaaaattgtgtacctttgaattaggtt 27101728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 27143616 - 27143550
Alignment:
Q  76 agatacaagttataacatatcactaataaagaagggaataagaaattgtgtacctttgaattaggtt 142  Q
    |||||||||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||||||||    
T  27143616 agatacaagttatagcatatcagtagtaaagaatggaataaaaaattgtgtacctttgaattaggtt 27143550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 19543478 - 19543424
Alignment:
Q  367 catagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  19543478 cataatttatattatgacattaacttataataattgattattgtcaatccataat 19543424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 27101515 - 27101459
Alignment:
Q  365 accatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||| |||||||||| |||||| |||||||||||| |||||| ||||||||||||    
T  27101515 accataatttatattataacattaacttataataattgattattgtcaatccataat 27101459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 27143337 - 27143281
Alignment:
Q  365 accatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||| |||||||||| |||||| |||||||||||| |||||| ||||||||||||    
T  27143337 accataatttatattataacattaacttataataattgattattgtcaatccataat 27143281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 157 - 421
Target Start/End: Complemental strand, 3470042 - 3469778
Alignment:
Q  157 atgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgaggg 255  Q
    |||||||||||||  |||||||||||||||||||||| || |||| | ||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  3470042 atgagagggatgattaccctcattccgtttagcaccagaa-tgttcagagtagtttaaccgtctgatgggatgacgtttaaatagttaaacggctgaggg 3469944  T
Q  256 caatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgctta 355  Q
    ||  ||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||||    
T  3469943 cagggacctctcattgggcttcgctaaatggtccaaaccatcacggtccatttagaaagaatagcccaatcacacatattcatcaattaattagtgctta 3469844  T
Q  356 acacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||||||||||| ||||||||||||||||| ||||| |||||| |||||| ||||| ||||||    
T  3469843 acacaatagaccataatttatattatgacattaacttatgataattgattattgtcaattcataat 3469778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 157 - 421
Target Start/End: Original strand, 19240464 - 19240728
Alignment:
Q  157 atgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgaggg 255  Q
    ||||||| |||||| ||||||||||| |||||||||| || | || ||| ||||||||||||||||||| || || ||||||||||||||||  ||||||    
T  19240464 atgagagagatgactaccctcattccatttagcaccagaa-tattcataatagtttaaccgtctgatgggataacgtttaaatagttaaacggatgaggg 19240562  T
Q  256 caatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgctta 355  Q
    ||  ||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  19240563 cagggacctctcattaggcttagctaaatggtccaatccatcacggtccatttagaaagaatatctcaatcacacatattcatcaactaattagtgctta 19240662  T
Q  356 acacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||||| |||||| |||||||||| |||||| |||||||||||| |||||| ||||||||||||    
T  19240663 acacaatataccataatttatattataacattaacttataataattgattattgtcaatccataat 19240728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 159 - 421
Target Start/End: Complemental strand, 31112564 - 31112306
Alignment:
Q  159 gagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggca 257  Q
    |||||||||||| ||||||||||||||||||||||     ||| | | ||||||||||||||||||| ||||| |||||||||||||||| || ||||||    
T  31112564 gagagggatgactaccctcattccgtttagcacca-----gttcagaatagtttaaccgtctgatgggatgacgtttaaatagttaaacggctaagggca 31112470  T
Q  258 atgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaac 357  Q
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||| || ||||||||||||||||||| ||||||    
T  31112469 tggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaagaatagcccaatcacacttattcatcaactaattagtacttaac 31112370  T
Q  358 acaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||||||||| |||||||||||| |||| |||||||||||| |||||| |  |||||||||    
T  31112369 acaatagaccataatttatattatgatattaacttataataattgattattgtagatccataat 31112306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 151 - 421
Target Start/End: Original strand, 32280714 - 32280986
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccata-aatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacga 248  Q
    ||||| |||||||||||||| |||||| ||| |||||||||   | |||||| | | |||||||||||| |||||| ||||| ||||||||| ||||||     
T  32280714 agaaggatgagagggatgactaccctcgttctgtttagcacaccagaatgttcagaatagtttaaccgtatgatgggatgacgtttaaatagctaaacgg 32280813  T
Q  249 ctgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaatta 348  Q
    ||||||| |  ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| |||| |||||||||||||||    
T  32280814 ctgagggtagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaagaatagtcaaatcacacatgttcatcaactaatta 32280913  T
Q  349 gtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||||| | ||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  32280914 gtgcttaatagaatagaccataatttatattatgacattaacttataataattgattattgtcaatccataat 32280986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 151 - 421
Target Start/End: Original strand, 32285658 - 32285930
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcac-cataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacga 248  Q
    ||||| ||||||| |||||| |||||||||||||||||||| |   |||||| | | ||||||||||||||||||| ||||| ||||||| ||||||||     
T  32285658 agaaggatgagagagatgactaccctcattccgtttagcacaccggaatgttcagaatagtttaaccgtctgatgggatgacgtttaaattgttaaacgg 32285757  T
Q  249 ctgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaatta 348  Q
    |||||||||  ||| ||||||| ||||||||||||||||| ||||||||||||||||||||  || |||| |||||||| ||||||||||||||||||||    
T  32285758 ctgagggcagagacctctcattaggcttagctaaatggtccaacccatcacggtccatttaagaaaaataattcaatcacacatattcatcaactaatta 32285857  T
Q  349 gtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||| |||||| |||| |||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  32285858 gtgtttaacagaataaaccataatttatattatgacattaacttataataattgattattgtcaatccataat 32285930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 209 - 421
Target Start/End: Original strand, 39032745 - 39032956
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    |||||||||||||||| ||||| ||||||||| |||||| |||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  39032745 tttaaccgtctgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccattt 39032844  T
Q  309 agaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatt 408  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||| ||||||    
T  39032845 agaaagaatagcccaatcacacatattcatcaactaattagtgcttaacagaatagaccata-attatattatgacattaacttataataattgattatt 39032943  T
Q  409 atcaatccataat 421  Q
     ||||||||||||    
T  39032944 gtcaatccataat 39032956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 209 - 417
Target Start/End: Original strand, 29960923 - 29961131
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    ||||||| |||||||| ||||| ||||||||| |||||| |||||||||  ||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  29960923 tttaaccatctgatgggatgacgtttaaatagctaaacggctgagggcagagacctctcattgggtttagctaaatggtccaacccatcacggtccattt 29961022  T
Q  309 agaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatt 408  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||    
T  29961023 agaaagaatagtccaatcacacatattcatcaactaattaatgcttaacacaatagaccataatttttattatgacattaacttataataattgattatt 29961122  T
Q  409 atcaatcca 417  Q
     ||||||||    
T  29961123 gtcaatcca 29961131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 209 - 417
Target Start/End: Original strand, 30010128 - 30010336
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    ||||||| |||||||| ||||| ||||||||| |||||| |||||||||  ||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  30010128 tttaaccatctgatgggatgacgtttaaatagctaaacggctgagggcagagacctctcattgggtttagctaaatggtccaacccatcacggtccattt 30010227  T
Q  309 agaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatt 408  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||    
T  30010228 agaaagaatagtccaatcacacatattcatcaactaattaatgcttaacacaatagaccataatttttattatgacattaacttataataattgattatt 30010327  T
Q  409 atcaatcca 417  Q
     ||||||||    
T  30010328 gtcaatcca 30010336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 209 - 421
Target Start/End: Original strand, 39039758 - 39039968
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    |||||||||||||||  ||||| ||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  39039758 tttaaccgtctgatgcgatgacgtttaaatagctaaacgactgagggcag-gacctctcattgggcttagctaaatggtccaacccatcacggtccattt 39039856  T
Q  309 agaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatt 408  Q
    |||||||||||  |||||| ||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||||| |||||||||| | ||||||    
T  39039857 agaaagaatagcccaatcacacatattcatcaactaattagtgtttaacagaatagaccata-attatattatgacattaacttataataactgattatt 39039955  T
Q  409 atcaatccataat 421  Q
     ||||||||||||    
T  39039956 gtcaatccataat 39039968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 157 - 421
Target Start/End: Original strand, 45677835 - 45678101
Alignment:
Q  157 atgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaat-gacatttaaatagttaaacgactgagg 254  Q
    |||||||||||||| ||||||||||||| |||||||| ||  ||| | | ||||||||||||||||||| || ||| ||||||||| |||||| ||||||    
T  45677835 atgagagggatgactaccctcattccgtgtagcaccagaagagttcagaatagtttaaccgtctgatgggattgacgtttaaatagctaaacggctgagg 45677934  T
Q  255 gcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgctt 354  Q
    |||  ||| ||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |  || |    
T  45677935 gcagggacctctcattgggcttaggtaaatggtccaacccatcacggtctatttaaaaagaatagttcaatcatacattttcatcaactaataaacgcat 45678034  T
Q  355 aacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    || ||||||||||||| | || ||||| ||||||  ||||||||||| ||||||  |||||||||||    
T  45678035 aatacaatagaccatattataaattataacattaatttataataattgattattgccaatccataat 45678101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 206 - 421
Target Start/End: Complemental strand, 38445787 - 38445572
Alignment:
Q  206 tagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtcca 305  Q
    ||||||||||||||||||  ||||| ||||||||| |||||||| |||||||  ||| ||| ||||| ||||||||||||||  ||||||||||||| ||    
T  38445787 tagtttaaccgtctgatgagatgacgtttaaatagctaaacgaccgagggcagagacctctaattggacttagctaaatggttcaacccatcacggttca 38445688  T
Q  306 tttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttatt 405  Q
    |||||||| ||||||||||||| |||||||||||||||||||| ||||||||  ||||||||||| |||||||||||| |||| |||||||||||| |      
T  38445687 tttagaaaaaatagttcaatcacacatattcatcaactaattaatgcttaactgaatagaccataatttatattatgatattaacttataataattgaac 38445588  T
Q  406 attatcaatccataat 421  Q
    ||| ||||||||||||    
T  38445587 attgtcaatccataat 38445572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 208 - 421
Target Start/End: Complemental strand, 41273104 - 41272891
Alignment:
Q  208 gtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatt 307  Q
    |||||||||||| |||| ||||| ||||||||| |||||| |||||||||  ||| |||||||   ||||||||||||||  |||| |||| ||||||||    
T  41273104 gtttaaccgtctaatgggatgacgtttaaatagataaacggctgagggcagggacctctcattaaacttagctaaatggttcaacctatcatggtccatt 41273005  T
Q  308 tagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattat 407  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||   | ||||||||| |||||    
T  41273004 tagaaagaatagcacaatcatacatattcatcaactaattagtgcttaacacaatagaccataatttatattataacattttataataataattgattat 41272905  T
Q  408 tatcaatccataat 421  Q
    | ||||||||||||    
T  41272904 tgtcaatccataat 41272891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 11172085 - 11172225
Alignment:
Q  281 aaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatatta 380  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  11172085 aaatgttccaacccatcacggtccatttagaaagaatagttcaatcacacatattcatcaactaattagtgcttatcagaatagaccataatttatatta 11172184  T
Q  381 tgacattagcttataataatttattattatcaatccataat 421  Q
    |||||||| |||||||||||| |||||| ||||||||||||    
T  11172185 tgacattaacttataataattgattattgtcaatccataat 11172225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 208 - 366
Target Start/End: Complemental strand, 46611957 - 46611799
Alignment:
Q  208 gtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatt 307  Q
    ||||||||||||||||| ||||| ||||||||  |||||| ||||||||| |||| ||| ||||||||||||||||||||| ||| ||||||| |||||     
T  46611957 gtttaaccgtctgatggcatgacgtttaaataactaaacggctgagggcagtgacctcttattgggcttagctaaatggtccaactcatcacgatccatc 46611858  T
Q  308 tagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagac 366  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  46611857 tagaaagaatagttcaatcacacatatttatcatctaattagtgcttaacacaatagac 46611799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 206 - 421
Target Start/End: Complemental strand, 50158316 - 50158101
Alignment:
Q  206 tagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtcca 305  Q
    ||||||||||||||||||  || ||||||||||||  ||||| |||||||||   || | ||||||  ||||| ||||||||| ||||||||||||||||    
T  50158316 tagtttaaccgtctgatgtgatcacatttaaatagccaaacggctgagggcatgaacctttcattgaacttagttaaatggtccaacccatcacggtcca 50158217  T
Q  306 tttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttatt 405  Q
    |||||||| |||||  ||||||||||||||||||||||||| ||||||||| ||| ||||||||| | || ||||| | ||||  ||||||||||| |||    
T  50158216 tttagaaataatagcacaatcatacatattcatcaactaatgagtgcttaatacagtagaccatattataaattataatattaatttataataattgatt 50158117  T
Q  406 attatcaatccataat 421  Q
    ||| ||||||||||||    
T  50158116 attgtcaatccataat 50158101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 232 - 377
Target Start/End: Original strand, 10626314 - 10626459
Alignment:
Q  232 tttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcataca 331  Q
    ||||||||| |||||| |||||||||  |||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||| |||    
T  10626314 tttaaatagctaaacggctgagggcagggaccactcattgggcttagctaaatggtccaacccatcacggtccatttagaaagaatagcccaatcacaca 10626413  T
Q  332 tattcatcaactaattagtgcttaacacaatagaccatagtttata 377  Q
    ||| |||| |||||||||||||||||||||||||||||| ||||||    
T  10626414 tatccatctactaattagtgcttaacacaatagaccataatttata 10626459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 210 - 341
Target Start/End: Complemental strand, 11458269 - 11458138
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattta 309  Q
    ||||||||||||||| ||||| ||||||||| |||||| || ||||||  ||| ||||||||||||||| ||||||||| || |||||||||||||||||    
T  11458269 ttaaccgtctgatggtatgacgtttaaatagctaaacggctaagggcatggacctctcattgggcttagttaaatggtcaaatccatcacggtccattta 11458170  T
Q  310 gaaagaatagttcaatcatacatattcatcaa 341  Q
    |||| |||||| || | | |||||||||||||    
T  11458169 gaaacaatagtccagttacacatattcatcaa 11458138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 11457334 - 11457260
Alignment:
Q  345 attagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||||||||||| | ||||||||| |||||||||  | |||| |||||||||||| |||||| ||||||||||||    
T  11457334 attagtgcttaacatagtagaccataatttatatta--atattaacttataataattgattattttcaatccataat 11457260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 41273275 - 41273168
Alignment:
Q  42 tgataaaagtttataga-ttcagccatagttcaatagatacaagttataacatatcactaataaagaagggaataagaaattgtgtacctttgaattagg 140  Q
    |||||||||||| |||| |||| |||||| ||| |||||||||| |||||||||||| ||| || ||| |||| ||||| ||||||||| |||||||| |    
T  41273275 tgataaaagttt-tagaattcaaccatagatcagtagatacaaggtataacatatcagtaacaaggaa-ggaagaagaatttgtgtacc-ttgaattatg 41273179  T
Q  141 ttgacgaagga 151  Q
    |||| ||||||    
T  41273178 ttgatgaagga 41273168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 39350997 - 39350935
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattg 271  Q
    |||||||||||||||| ||||| ||||||||| ||||||  ||||||||  ||| ||||||||    
T  39350997 tttaaccgtctgatgggatgacgtttaaatagctaaacggttgagggcagggacctctcattg 39350935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 151 - 421
Target Start/End: Complemental strand, 48853797 - 48853526
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| |||||||||||||| ||||||||||||| |||||||| ||   || | | ||||||||||||||||||| ||||| |||||||||||||||| |    
T  48853797 agaaggatgagagggatgactaccctcattccgtgtagcaccagaagaattcacaatagtttaaccgtctgatgggatgacgtttaaatagttaaacggc 48853698  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattag 349  Q
    ||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  48853697 tgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaagaatagtccaatcatacatattcatcaactaatgag 48853598  T
Q  350 tgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  48853597 tgcttaatacaatagaccatattataaattataacattaatttataataattgattattgtcaatccataat 48853526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 171 - 421
Target Start/End: Original strand, 267707 - 267956
Alignment:
Q  171 accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcatt 270  Q
    |||||||||||||||||||||| || |||| | | |||||||||||| |||||| ||||| ||||||||| |||||| |||||||||  ||| |||||||    
T  267707 accctcattccgtttagcaccagaa-tgttcagaatagtttaaccgtttgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcatt 267805  T
Q  271 gggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccata 370  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  267806 gggcttagctaaatggtcaaacccatcacggtccatttagaaagaatagcccaatcagacatattcatcaactaattagtgcttaacgcaatagaccata 267905  T
Q  371 gtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
     ||||||||||||||| | |||||||||||| |||||| ||||||||||||    
T  267906 atttatattatgacatcaacttataataattgattattgtcaatccataat 267956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 151 - 421
Target Start/End: Complemental strand, 32517317 - 32517044
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatag---tagtttaaccgtctgatggaatgacatttaaatagttaaac 246  Q
    ||||| |||||||||||||| |||||||||||||||||||||| || |||| | |    || ||||||||||| |||| ||||| ||||||||| |||||    
T  32517317 agaaggatgagagggatgactaccctcattccgtttagcaccagaa-tgttcagaagaatactttaaccgtctaatgggatgacgtttaaatagctaaac 32517219  T
Q  247 gactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaat 346  Q
    | |||||||||  ||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||  |||||||||||||||||||||||||    
T  32517218 ggctgagggcatggacctctcattgggcttagctaaatggtccaacccatcacggtcaatttagtaagaatagcccaatcatacatattcatcaactaat 32517119  T
Q  347 tagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
     ||||||||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  32517118 aagtgcttaatacaatagaccatattataaattataacattaatttataataattgattattgtcaatccataat 32517044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 42 - 421
Target Start/End: Original strand, 26450742 - 26451128
Alignment:
Q  42 tgataaaagtttatagattcagccatagttcaatagatacaagttataacatatcac---taataaagaagggaataagaaattgtgtacctttgaatta 138  Q
    |||||| ||||||  |||| |||||| | ||| || |||||| ||||| |||||||    |||||||||| | |  ||||||||||||||||||||||||    
T  26450742 tgataagagtttaaggatttagccatggatcactatatacaaattatagcatatcatcaataataaagaatgaataaagaaattgtgtacctttgaatta 26450841  T
Q  139 ggttgacgaaggagaa---------gaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatg 228  Q
    |||||| |||||| ||         | || ||||||||||| |||||||||||||||||||  | |  |||| | | | | ||||||||||||||| |||    
T  26450842 ggttgatgaaggataactgtcaaaaggataagagggatgactaccctcattccgtttagcagtagag-tgttcagaat-gcttaaccgtctgatgggatg 26450939  T
Q  229 acatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcat 328  Q
    || ||||||||| |||||| ||||||| |  ||| ||||||||||||||||||||||||| |||||||||| ||||||||||||    |||  ||||||     
T  26450940 acgtttaaatagctaaacggctgagggaagggacctctcattgggcttagctaaatggtccaacccatcacagtccatttagaa----tagcccaatcac 26451035  T
Q  329 acatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    | |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  26451036 aaatattcatcatctaattagtgcttaacacaatagaccataatttatattatgacattaacttataataattgattattgtcaatccataat 26451128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 274 - 421
Target Start/End: Original strand, 278876 - 279023
Alignment:
Q  274 cttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtt 373  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||| |||||||||||| ||    
T  278876 cttagctaaatggtccaacccatcacggtccatttagaaagaatagcccaatcagacatattcatcaactaattagtgcttaacgcaatagaccataatt 278975  T
Q  374 tatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||||||||| |  ||||||||||| |||||| ||||||||||||    
T  278976 tatattatgacatcaatttataataattgattattgtcaatccataat 279023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 216 - 421
Target Start/End: Original strand, 40771648 - 40771851
Alignment:
Q  216 gtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatg-gtctaacccatcacggtccatttagaaag 314  Q
    ||||||||||||||  ||||||||| |||||| |||||||||| ||| |||||||| ||||||||||||| ||| ||  ||||||||||||||||||||     
T  40771648 gtctgatggaatgatgtttaaatagctaaacggctgagggcaaggacctctcattgagcttagctaaatgagtc-aattcatcacggtccatttagaaac 40771746  T
Q  315 aatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaat 414  Q
    ||||| ||||||| |||||||||  | |||||||||||| |||||||||||||||| |||||||||  | |||| |||||||||||| ||| |  |||||    
T  40771747 aatagctcaatcacacatattcactagctaattagtgctcaacacaatagaccataatttatatta--agattaacttataataattgattgtcgtcaat 40771844  T
Q  415 ccataat 421  Q
    |||||||    
T  40771845 ccataat 40771851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 207 - 376
Target Start/End: Original strand, 29148714 - 29148882
Alignment:
Q  207 agtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccat 306  Q
    ||||||| |||||||||| ||||| ||||||||| |||||| |||||||||  ||| ||||||||| |||||||||||| || |||| ||||| ||||||    
T  29148714 agtttaaacgtctgatgggatgacgtttaaatagctaaacggctgagggcag-gacctctcattggacttagctaaatgttccaaccaatcaccgtccat 29148812  T
Q  307 ttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttat 376  Q
    |||||||||||| |  || |||||||||||||||||||||||||| |||| || |||||| ||| |||||    
T  29148813 ttagaaagaataatcgaaacatacatattcatcaactaattagtgtttaataccatagactataatttat 29148882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 290 - 421
Target Start/End: Complemental strand, 40771295 - 40771166
Alignment:
Q  290 aacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattag 389  Q
    |||| |||||| |||||||||||| |||||  |||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||  ||| ||||     
T  40771295 aacctatcacgttccatttagaaacaatagcccaatcacacatattcatcaactaattagtgtttaacacaatagaccataatttatat--tgagattaa 40771198  T
Q  390 cttataataatttattattatcaatccataat 421  Q
    |||||||||||| |||||  ||||||||||||    
T  40771197 cttataataattgattatcgtcaatccataat 40771166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 377
Target Start/End: Complemental strand, 5173002 - 5172840
Alignment:
Q  215 cgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaag 314  Q
    ||||| |||| ||||| ||||||||| ||||||  |||||||||  || |||||||| |||||| ||||| ||  ||||||||| |||| |||||||||     
T  5173002 cgtctaatgggatgacgtttaaatagctaaacggttgagggcaagaacctctcattgtgcttaggtaaatagttcaacccatcatggtcaatttagaaac 5172903  T
Q  315 aatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttata 377  Q
    |||| | |||||| | |||||||||||||||||||||||||| |||||||| |||| ||||||    
T  5172902 aataatccaatcacatatattcatcaactaattagtgcttaatacaatagatcataatttata 5172840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 157 - 421
Target Start/End: Complemental strand, 9129 - 8863
Alignment:
Q  157 atgagagggatgac-accctcattccgtttagcaccataaatgttt-atagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagg 254  Q
    |||||||||||||| |||||||||||||||||||||| ||   ||| | | | ||||||||||||||||| ||||| ||||||||| |||||| ||||||    
T  9129 atgagagggatgactaccctcattccgtttagcaccagaagaatttcagaatggtttaaccgtctgatgggatgacgtttaaatagctaaacggctgagg 9030  T
Q  255 gcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgctt 354  Q
    |||  ||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||    
T  9029 gcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatttagaaagaatagatcaatcacacatattcataaactaattagtgctt 8930  T
Q  355 aacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||| |||||| ||||||||||||    
T  8929 aacacaatagaccataatttatattatgactttaacttataataattgattattgtcaatccataat 8863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 157 - 384
Target Start/End: Complemental strand, 4429 - 4200
Alignment:
Q  157 atgagagggatgac-accctcattccgtttagcaccataaatgttt-atagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagg 254  Q
    |||||||||||||| |||||||||||||||||||||| ||   ||| | | | ||||||||||||||||| ||||| ||||||||| | ||||  |||||    
T  4429 atgagagggatgactaccctcattccgtttagcaccagaagaatttcagaatggtttaaccgtctgatgggatgacgtttaaatagctgaacggttgagg 4330  T
Q  255 gcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgctt 354  Q
    |||  ||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||    
T  4329 gcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatttagaaagaatagtccaatcacacatattcataaactaattagtgttt 4230  T
Q  355 aacacaatagaccatagtttatattatgac 384  Q
    |||||||||||||||| |||||||||||||    
T  4229 aacacaatagaccataatttatattatgac 4200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 151 - 421
Target Start/End: Original strand, 32038048 - 32038319
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| |||||||||||||| ||||||||||||| || ||||| ||  ||| | | ||||||||||||||||||| ||||| ||||||||| |||||| |    
T  32038048 agaaggatgagagggatgactaccctcattccgtgtaacaccagaagagttcagaatagtttaaccgtctgatgggatgacgtttaaatagctaaacggc 32038147  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattag 349  Q
    ||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  32038148 tgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaagaatagtccaatcatacatattcatcaactaatgag 32038247  T
Q  350 tgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  32038248 tgcttaatacaatagaccatattataaattataacattaatttataataattgattattgtcaatccataat 32038319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 151 - 421
Target Start/End: Complemental strand, 44626319 - 44626049
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| |||||||||||||| ||||||||||||||||||||   || | || | | ||||||||||||||||||  ||||| ||||||||| |||||| |    
T  44626319 agaaggatgagagggatgactaccctcattccgtttagcactggaa-tattcagaatagtttaaccgtctgatgagatgacgtttaaatagctaaacggc 44626221  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattag 349  Q
    ||| ||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  44626220 tgaaggcagagacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaagaatagctcaattagacatattcatcaactaattag 44626121  T
Q  350 tgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||||||||||| |||||| ||||||||||||||| | |||||||||||| |||||| ||||||||||||    
T  44626120 tgcttaacacaataaaccataatttatattatgacatcaacttataataattgattattgtcaatccataat 44626049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 226 - 421
Target Start/End: Complemental strand, 1262441 - 1262246
Alignment:
Q  226 atgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaat 325  Q
    ||||| ||||||| | |||||| |||||||||  ||  ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||  ||||    
T  1262441 atgacgtttaaatggctaaacggctgagggcatggatctctcattaggcttagctaaatggtcaaactcatcacggtccatttagaaagaatagcccaat 1262342  T
Q  326 catacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    || ||||||||||||||||||||||||||||||||||||| |||| |||||||||  |||||| |||||||||||| |||||| ||||||||||||    
T  1262341 cacacatattcatcaactaattagtgcttaacacaatagatcataatttatattagaacattaacttataataattgattattctcaatccataat 1262246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 157 - 421
Target Start/End: Original strand, 26005484 - 26005751
Alignment:
Q  157 atgagagggatgac-accctcattccgtttagcaccataaatgtttatag---tagtttaaccgtctgatggaatgacatttaaatagttaaacgactga 252  Q
    ||||||| |||||| |||||||||||||||||||||| || |||| |||    |||||||||||| |||||| ||||| ||||||||| |||||| ||||    
T  26005484 atgagagagatgactaccctcattccgtttagcaccagaa-tgttcataagaatagtttaaccgtatgatgggatgacgtttaaatagctaaacggctga 26005582  T
Q  253 gggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgc 352  Q
    ||| |  ||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||  |||||||||||||||||||| |||| |||||    
T  26005583 gggtagggacctctcattgggcttagctaaatggtccaacccatcacagtccatttagtaagaatagcccaatcatacatattcatcaattaatgagtgc 26005682  T
Q  353 ttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||| | |||| |||||| | || ||||| | ||||  ||||||||||| |||||| ||||||||||||    
T  26005683 ttaatataataaaccatattataaattataatattaatttataataattgattattgtcaatccataat 26005751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 42 - 421
Target Start/End: Original strand, 45265965 - 45266332
Alignment:
Q  42 tgataaaagtttatag-attcagccatagttcaatagatacaagttataacatatcactaataaagaagggaataagaaattgtgtacctttgaattagg 140  Q
    |||||||||||| ||| ||| |||||| | ||| ||||||||| ||| | |||||||  || |||||||| ||||||| |||||||||||||||| | ||    
T  45265965 tgataaaagttt-tagtatttagccatggatcattagatacaaattacagcatatcaaaaacaaagaagg-aataagagattgtgtacctttgaacttgg 45266062  T
Q  141 tt-gacgaaggagaagaatgagagggatgacaccctcattccgtttagcaccata-aatgtttatagtagtttaaccgtctgatggaatgacatttaaat 238  Q
    || || ||| || ||   | ||| |||||||  |||||||||||||||| |   | |||||| | | ||||||||||||||||||||||||| |||||||    
T  45266063 tttgatgaaagataactgtcagaaggatgactacctcattccgtttagcgcagaagaatgttcaaaatagtttaaccgtctgatggaatgacgtttaaat 45266162  T
Q  239 agttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcat 338  Q
    || |||||||||||||||| |||  ||||||||||||||             |||||||||| ||||||||||||||||||  ||||||  |||||| ||    
T  45266163 agctaaacgactgagggcagtgatctctcattgggctta-------------acccatcacgatccatttagaaagaatagcccaatcacccatatttat 45266249  T
Q  339 caactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||||||||||||||| |||||| || ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  45266250 caactaattagtgcttaatacaatatactataatttatattatgacattaacttataataatttattattgtcaatccataat 45266332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 27289 - 27146
Alignment:
Q  41 gtgataaaagtttatagattcagccatagttcaatagatacaagttataacatatcactaataaagaagggaataagaaattgtgtacctttgaattagg 140  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||    
T  27289 gtgataaaagtttatagattcaga------tcaatagatacaagttataacatatcagtaataaataagggaataagaaattgtgtacatttgaattagg 27196  T
Q  141 ttgacgaaggagaagaatgagagggatgac-accctcattccgtttagca 189  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||||||    
T  27195 ttgacgaaagagaagaatgagagggatgactaccctcatttcgtttagca 27146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 151 - 340
Target Start/End: Original strand, 17497454 - 17497643
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| |||||| | ||||| ||||||||||||||||||||||||| |||| | | |||  |||||||||||||| ||||| ||||||||| ||||||||    
T  17497454 agaaggatgagaagaatgactaccctcattccgtttagcaccataa-tgttcaaaatagaataaccgtctgatgggatgacgtttaaatagctaaacgac 17497552  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatca 340  Q
    ||||||||  ||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||||   |||||| ||||||||||||    
T  17497553 tgagggcagggacctctcattgggtttggctaaatggtccaacccatcacggtccatttagaaagaataacccaatcacacatattcatca 17497643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 276 - 401
Target Start/End: Complemental strand, 18324865 - 18324740
Alignment:
Q  276 tagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagttta 375  Q
    |||||||||| |  |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||    
T  18324865 tagctaaatgattcaacccatcacggtccatttagaaagaatagttcaatcgcacttattcatcaactaattagtgcttaacacaatagaccataattta 18324766  T
Q  376 tattatgacattagcttataataatt 401  Q
    || ||| | |||| ||||||||||||    
T  18324765 taatataatattaacttataataatt 18324740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 152 - 325
Target Start/End: Original strand, 34548032 - 34548210
Alignment:
Q  152 gaagaatgagagggatgac-accctcattccgtttagcaccataa---atgtttatagtagtttaaccgtctgatg-ga-atgacatttaaatagttaaa 245  Q
    |||| |||||||||||| | ||| |||||||||||||||||| ||   ||||| | | | |||||||||||||||| || ||||| ||||| ||| ||||    
T  34548032 gaaggatgagagggatgtctaccttcattccgtttagcaccagaatgaatgttcagaattgtttaaccgtctgatgcgatatgacgtttaa-tagctaaa 34548130  T
Q  246 cgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaat 325  Q
    || |||||||||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  34548131 cggctgagggcaaggacctctcattgagcttagctaaatggtctaatccatcacggtccatttagaaagaatagctcaat 34548210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 151 - 415
Target Start/End: Complemental strand, 38144076 - 38143818
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| |||||||||||||| ||| ||||||||| |||||||  || |||| | | |||||||||||| |||||| ||||  ||||||||| |||||| |    
T  38144076 agaaggatgagagggatgactaccgtcattccgtctagcaccggaa-tgttcagaatagtttaaccgtatgatgggatgaggtttaaatagctaaacggc 38143978  T
Q  250 tgaggg--caatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaatt 347  Q
    ||||||  ||  ||| ||||||||||||| | ||||||||| ||||||||| ||| |||||| ||||||||   |||||||        ||||||||||     
T  38143977 tgagggggcagggacctctcattgggcttggataaatggtccaacccatcatggttcatttaaaaagaatatcccaatcat--------atcaactaatg 38143886  T
Q  348 agtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatc 415  Q
    ||||||||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||||    
T  38143885 agtgcttaatacaatagaccatattataaattataacattaatttataataattgattattgtcaatc 38143818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 363
Target Start/End: Complemental strand, 39517480 - 39517326
Alignment:
Q  210 ttaaccgtctgatgg-aatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    ||||||||||||||| |||||  ||||||||| |||||||||||  |||  ||| ||||||||  || |||||||| ||| ||||||| || ||||||||    
T  39517480 ttaaccgtctgatgggaatgatgtttaaatagctaaacgactgaaagcagagacctctcattgaactcagctaaattgtcaaacccattacagtccattt 39517381  T
Q  309 agaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaata 363  Q
    |  || ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  39517380 aataacaatagttcaatcacacatattcatcgactaattagtgcttaacacaata 39517326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 45272805 - 45272876
Alignment:
Q  305 atttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttat 376  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  45272805 atttagaaagaatagtccaattacacatattcatcaactaattagtgtttaacacgatagaccatagtttat 45272876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 18324988 - 18324939
Alignment:
Q  208 gtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggca 257  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  18324988 gtttaaccgtctgatgggatgacgtttaaatagttaaacgactgagggca 18324939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 38151080 - 38151018
Alignment:
Q  195 aatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggca 257  Q
    |||||| ||| |||||||||||||||||||  |||| ||||||||| ||||||||||||||||    
T  38151080 aatgttcataatagtttaaccgtctgatggggtgacgtttaaatagctaaacgactgagggca 38151018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 34548212 - 34548277
Alignment:
Q  356 acacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||||||||||| ||||||||||  |||||  ||||||||||| |||||| ||||||||||||    
T  34548212 acacaatagaccataatttatattatatcattaatttataataattgattattgtcaatccataat 34548277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 17497646 - 17497684
Alignment:
Q  383 acattagcttataataatttattattatcaatccataat 421  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  17497646 acattaacttataataattgattattatcaatccataat 17497684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 151 - 420
Target Start/End: Complemental strand, 39574690 - 39574422
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
    ||||| |||||||||||||  | ||||||||||||||||||||||  |  ||  ||||||||||||||||||||| ||||| ||||||||| |||||| |    
T  39574690 agaaggatgagagggatgattatcctcattccgtttagcaccata--ttgttcgagtagtttaaccgtctgatgggatgacgtttaaatagctaaacggc 39574593  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattag 349  Q
    | ||||||  ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  39574592 taagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaagaatagcccaatcacacatattcatcaactaattag 39574493  T
Q  350 tgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataa 420  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| | ||||| |||||    
T  39574492 tgcttaacacaatagaccataatttatattatgacattaacttataataattgattactgtcaattcataa 39574422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 208 - 421
Target Start/End: Original strand, 24515354 - 24515564
Alignment:
Q  208 gtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatt 307  Q
    |||||||||| | |||| ||||| ||||||||| |||| | |||||||||  ||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  24515354 gtttaaccgtattatgggatgacgtttaaatagctaaatggctgagggcagagacctctcattggacttagctaaatggtccaacccatcacggtccatt 24515453  T
Q  308 tagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattat 407  Q
    ||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||   ||||||||||| |||||    
T  24515454 tagaaagaatagcccgatcacacatattcatcaactaattagtgcttaacacaatagaccataatttatattataacatt---ttataataattgattat 24515550  T
Q  408 tatcaatccataat 421  Q
    | ||||||||||||    
T  24515551 tgtcaatccataat 24515564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 211 - 421
Target Start/End: Complemental strand, 41141010 - 41140800
Alignment:
Q  211 taaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttag 310  Q
    ||||||||| |||| ||||| ||||||||| |||||| |||||||||  ||| ||||||  ||||||||||||||||| ||||||||||||||||||||     
T  41141010 taaccgtctaatgggatgacgtttaaatagctaaacggctgagggcagggacctctcatcaggcttagctaaatggtccaacccatcacggtccatttaa 41140911  T
Q  311 aaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattat 410  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||   | ||||||||| |||||| |    
T  41140910 aaagaatagaccaatcatacatattcatcaactaattaatgcttaacataatagaccataatttatattataacattttataataataattgattattgt 41140811  T
Q  411 caatccataat 421  Q
    |||||||||||    
T  41140810 caatccataat 41140800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 152 - 421
Target Start/End: Complemental strand, 47858304 - 47858034
Alignment:
Q  152 gaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgact 250  Q
    |||| |||||||||||||| |||||||||| || |||||| | ||   || | | |||||||||| |||||||| ||||| ||||||||| |||||| ||    
T  47858304 gaaggatgagagggatgaccaccctcattcggtatagcactagaagaattcacaatagtttaaccatctgatgggatgacgtttaaatagctaaacggct 47858205  T
Q  251 gagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagt 350  Q
    |||||||  ||| ||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||| |||||||||||||||||||||||||| |||    
T  47858204 gagggcagggacctctcattgggcttagctaaatggtccaacccattacgatcaatttagaaagaatagctcaatcatacatattcatcaactaatgagt 47858105  T
Q  351 gcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    | |||| ||||||||||||| | || ||||| ||||||  ||||  ||||| |||||| |||||| |||||    
T  47858104 gtttaatacaatagaccatattataaattataacattaatttattttaattgattattgtcaatctataat 47858034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 209 - 421
Target Start/End: Original strand, 9764978 - 9765189
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    |||||||||| ||||| ||||| ||||||||| |||||| |||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  9764978 tttaaccgtc-gatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccattt 9765076  T
Q  309 agaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatt 408  Q
    | |||||||||  ||||||||||||||||||||||||| ||||||||| ||| ||||||||| | || ||||| ||||||  ||||||||||| ||||||    
T  9765077 ataaagaatagcccaatcatacatattcatcaactaatgagtgcttaatacagtagaccatattataaattataacattaatttataataattgattatt 9765176  T
Q  409 atcaatccataat 421  Q
       ||||||||||    
T  9765177 gaaaatccataat 9765189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 147 - 370
Target Start/End: Original strand, 9758299 - 9758523
Alignment:
Q  147 aaggagaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagta--gtttaaccgtctgatggaatgacatttaaatagtta 243  Q
    |||||||||| ||||||| ||||| ||||||||||||| |||||||| ||  ||| ||| ||   |||||||||||||||| ||||| ||||||||| ||    
T  9758299 aaggagaaga-tgagagg-atgactaccctcattccgtgtagcaccagaagagttcataataatttttaaccgtctgatgggatgacgtttaaatagcta 9758396  T
Q  244 aacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaact 343  Q
    || | |||| |||| |||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  9758397 aatggctgaaggcagtgacctctcattgggcttagctaaatgttccaacccatcacggtccatttagaaagaatagcccaatcatacatattcatcaact 9758496  T
Q  344 aattagtgcttaacacaatagaccata 370  Q
    ||| ||||||||| ||| |||||||||    
T  9758497 aatgagtgcttaatacagtagaccata 9758523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 210 - 377
Target Start/End: Original strand, 12017733 - 12017899
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattta 309  Q
    ||||| ||||||||| ||||| |||||||||||||||| |||||||||  |||  || ||||| ||||||||||||||| ||| ||||||||||||||||    
T  12017733 ttaactgtctgatgggatgacgtttaaatagttaaacggctgagggcagggac--cttattggacttagctaaatggtccaactcatcacggtccattta 12017830  T
Q  310 gaaa-gaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttata 377  Q
    |||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||    
T  12017831 gaaaagaataattcaatcagacatattcatcaactaattagtgtttaacacaatagatcataatttata 12017899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 327
Target Start/End: Complemental strand, 39581233 - 39581064
Alignment:
Q  157 atgagagggatgaca-ccctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgaggg 255  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||||   |||||||||||||| |||| | ||||| ||||||||| ||||||||||||||    
T  39581233 atgagagggatgacttccctcattctgtttagcaccataa-tgttcg-agtagtttaaccgtttgattggatgacgtttaaatagctaaacgactgaggg 39581136  T
Q  256 caatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatca 327  Q
    ||  ||| ||||||||||||||||||||| ||  ||| ||||||||||||||||||||||||| ||||||||    
T  39581135 cagggacctctcattgggcttagctaaattgttcaactcatcacggtccatttagaaagaatatttcaatca 39581064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 24523172 - 24523266
Alignment:
Q  276 tagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccata 370  Q
    ||||||||||||| |||||||||||||||||||| |||||||||  |||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  24523172 tagctaaatggtccaacccatcacggtccatttaaaaagaatagaccaatcacacatattcatcaattaattagtgcttaacacaatagaccata 24523266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 39580527 - 39580437
Alignment:
Q  331 atattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  39580527 atattcatcaactaattagtacttaacacaatagaccataatttatattatgacattaacttataataattgattattgtcaatccataat 39580437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 47854740 - 47854650
Alignment:
Q  331 atattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||||||||||||| |||| |||| ||||||||||||| | || ||||| ||||||  ||||  ||||| |||||| ||||||||||||    
T  47854740 atattcatcaactaatgagtgtttaatacaatagaccatattataaattataacattaatttattttaattgattattgtcaatccataat 47854650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 38278983 - 38278914
Alignment:
Q  295 atcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtg-cttaacacaata 363  Q
    ||||||||||||| ||| | |||||| |||||| |||||||||||||||||||||||  |||||||||||    
T  38278983 atcacggtccattcagagacaatagtccaatcacacatattcatcaactaattagtgtattaacacaata 38278914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 158 - 421
Target Start/End: Original strand, 42567597 - 42567859
Alignment:
Q  158 tgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggc 256  Q
    ||||||||||||| |||||||||| ||||||||||| || |||| ||| ||||||||||||||||||| ||||| |||||||||||||||  ||||||||    
T  42567597 tgagagggatgactaccctcattc-gtttagcaccagaa-tgttcataatagtttaaccgtctgatgggatgacgtttaaatagttaaacagctgagggc 42567694  T
Q  257 aatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaa 356  Q
    |  ||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||  |||||| |||||||||||||||||||| |||||||    
T  42567695 agggacctctcattgggcttagctaaatggtccaactcatcacggtccatttaaaaagaatagcccaatcagacatattcatcaactaattaatgcttaa 42567794  T
Q  357 cacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    | |||||||||||| ||||||||||||||| | |||||||||||| |||||| ||||||||||||    
T  42567795 cgcaatagaccataatttatattatgacatcaacttataataattgattattgtcaatccataat 42567859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 209 - 421
Target Start/End: Complemental strand, 6262343 - 6262131
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattt 308  Q
    |||||||||||||||| || || ||||||||| |||||| || ||||||   || ||||||||||||||||||||||||| ||||||||||| |||||||    
T  6262343 tttaaccgtctgatgggataacgtttaaatagctaaacggctaagggcagacacctctcattgggcttagctaaatggtccaacccatcacgatccattt 6262244  T
Q  309 agaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatt 408  Q
    |||||||||||| |||||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||    
T  6262243 agaaagaatagtccaatcacacatattcgtcaattaattagtgcttaacacaatagaccataatttatattatgacattaacttataataattgattatt 6262144  T
Q  409 atcaatccataat 421  Q
     ||||||||||||    
T  6262143 gtcaatccataat 6262131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 183 - 421
Target Start/End: Original strand, 35904965 - 35905202
Alignment:
Q  183 tttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaa 282  Q
    ||||||||||||| |||| | | ||||||||| ||||||||  ||||| ||||||||| |||||| || ||||||  ||| |||||||||||||||||||    
T  35904965 tttagcaccataa-tgttcagaatagtttaactgtctgatgagatgacgtttaaatagctaaacggctaagggcagagacctctcattgggcttagctaa 35905063  T
Q  283 atggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatg 382  Q
    |||||  ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  35905064 atggttcaacccatcacggtccatttagaaagaatagttcaatcacccatattcatcaactaattagtgcttaacacaatagaccataatttacattatg 35905163  T
Q  383 acattagcttataataatttattattatcaatccataat 421  Q
    | |||  |||||||||||| |||||| | ||||||||||    
T  35905164 atatttacttataataattgattattgtgaatccataat 35905202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 171 - 421
Target Start/End: Original strand, 24423168 - 24423417
Alignment:
Q  171 accctcattccgtttagcaccataaatgtttatagtagttt-aaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcat 269  Q
    |||||||||||||||||||||| || |||| | | |||||| ||||||||||||  ||||||||||||||| |||||||||||||| |  ||| ||||||    
T  24423168 accctcattccgtttagcaccagaa-tgttcagaatagttttaaccgtctgatgagatgacatttaaatagctaaacgactgagggaagggacctctcat 24423266  T
Q  270 tgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccat 369  Q
    ||||||||| ||||||||| ||||||| ||| ||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||| |||||    
T  24423267 tgggcttagttaaatggtccaacccattacgatccatttagaaagaatagtccaatcacacatattcatc-attaattagtgcttaacacaatataccat 24423365  T
Q  370 agtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    | ||||||| || |||||| |||||||||||| |||||| ||||||||||||    
T  24423366 aatttatataataacattaacttataataattgattattgtcaatccataat 24423417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 210 - 421
Target Start/End: Complemental strand, 36049027 - 36048816
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattta 309  Q
    |||| ||| |||||| ||||| ||||||||| |||||| |||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  36049027 ttaatcgtatgatgggatgacgtttaaatagctaaacggctgagggcagagacctctcattgggcttagctaaatggtccaacccatcacggtccattta 36048928  T
Q  310 gaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatta 409  Q
    ||||||||||  |||||| |||||||||||| |||||||||| ||||||||| |||||||| |||||||||||| |||| |||||||||||| ||||||     
T  36048927 gaaagaatagcccaatcacacatattcatcatctaattagtgtttaacacaaaagaccataatttatattatgaaattaacttataataattgattattg 36048828  T
Q  410 tcaatccataat 421  Q
    |||| |||||||    
T  36048827 tcaaaccataat 36048816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 210 - 421
Target Start/End: Complemental strand, 2228994 - 2228783
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattta 309  Q
    ||||||||||||||  ||||| ||||||||||||||||  |||||||   ||| ||| ||||||||||| ||||||||  ||||||||||||||||||||    
T  2228994 ttaaccgtctgatgagatgacgtttaaatagttaaacggttgagggctgagacctctaattgggcttagttaaatggttcaacccatcacggtccattta 2228895  T
Q  310 gaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatta 409  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||| | |||| |||||||||||| ||||||     
T  2228894 gaaagaatagctcaatcacacatattcatcaactaattagtgctcaactcaatagaccataatttatattataatattaacttataataattgattattg 2228795  T
Q  410 tcaatccataat 421  Q
    || |||||||||    
T  2228794 tcgatccataat 2228783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 176 - 421
Target Start/End: Original strand, 18891074 - 18891318
Alignment:
Q  176 cattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggct 275  Q
    ||||| || |||||||| ||  ||| ||| ||||||||| || |||||| ||||| ||||||||| |||||| |||||||||  ||| ||||||||||||    
T  18891074 cattcagtgtagcaccagaagagttcataatagtttaactgt-tgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggct 18891172  T
Q  276 tagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagttta 375  Q
    || ||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||| | ||    
T  18891173 taactaaatggtctaacccatcacagtccattcaaaaagaatagtccaatcatacatattcatcaactaatgagtgcttaatacaatataccatattata 18891272  T
Q  376 tattatgacattagcttataataatttattattatcaatccataat 421  Q
     ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  18891273 aattataacattaatttataataattgattattgtcaatccataat 18891318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 220 - 421
Target Start/End: Complemental strand, 33366885 - 33366681
Alignment:
Q  220 gatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatag 319  Q
    ||||| ||||| ||||||||| |||||| |||||||||  ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||     
T  33366885 gatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacgatccatttagaaagaataa 33366786  T
Q  320 ttcaatcatacatattcatcaac---taattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatcc 416  Q
      |||||||||||||||||||||   |||| ||||||||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| |||||||    
T  33366785 cccaatcatacatattcatcaactaataatgagtgcttaatacaatagaccatactataaattataacattaatttataataattgattattgtcaatcc 33366686  T
Q  417 ataat 421  Q
    |||||    
T  33366685 ataat 33366681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 264 - 421
Target Start/End: Complemental strand, 54256325 - 54256170
Alignment:
Q  264 tctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaata 363  Q
    |||||||| |||||||||||||||  |||| |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||    
T  54256325 tctcattgagcttagctaaatggttcaaccgatcacggtccatttagaaagaatagttcaatca--catattcatcaattaattagtgcttaacacaata 54256228  T
Q  364 gaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    || |||| ||||||||||||||||| | |||||||||| |||||| ||||||||||||    
T  54256227 gatcataatttatattatgacattaacatataataattgattattgtcaatccataat 54256170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 208 - 421
Target Start/End: Original strand, 13393676 - 13393890
Alignment:
Q  208 gtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatt 307  Q
    ||||||||||||||||  ||||  ||||||||| |||| | ||||||| || ||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  13393676 gtttaaccgtctgatgagatgaagtttaaatagctaaatggctgagggaaaggacctctcattgggcttagctaaatggtccaactcatcacggtccatt 13393775  T
Q  308 tagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagc--ttataataatttatt 405  Q
    || ||||||||| | |||||  |||||||||||||||||||||| ||||| |||||||||||| |||||||||| | ||| ||  ||||||||||| |||    
T  13393776 taaaaagaatagcttaatcacgcatattcatcaactaattagtgtttaactcaatagaccataatttatattataatatt-gcttttataataattgatt 13393874  T
Q  406 attatcaatccataat 421  Q
    ||| ||||||||||||    
T  13393875 attgtcaatccataat 13393890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 208 - 421
Target Start/End: Original strand, 13396815 - 13397029
Alignment:
Q  208 gtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatt 307  Q
    ||||||||||||||||  ||||  ||||||||| |||| | ||||||| || ||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  13396815 gtttaaccgtctgatgagatgaagtttaaatagctaaatggctgagggaaaggacctctcattgggcttagctaaatggtccaactcatcacggtccatt 13396914  T
Q  308 tagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagc--ttataataatttatt 405  Q
    || ||||||||| | |||||  |||||||||||||||||||||| ||||| |||||||||||| |||||||||| | ||| ||  ||||||||||| |||    
T  13396915 taaaaagaatagcttaatcacgcatattcatcaactaattagtgtttaactcaatagaccataatttatattataatatt-gcttttataataattgatt 13397013  T
Q  406 attatcaatccataat 421  Q
    ||| ||||||||||||    
T  13397014 attgtcaatccataat 13397029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 213 - 377
Target Start/End: Original strand, 44160724 - 44160887
Alignment:
Q  213 accgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaa 312  Q
    |||||||||||| ||||| ||||||||| |||||| | |||||||| ||  |||| |||||||||||||||||||  |||||| |||| |||||||| ||    
T  44160724 accgtctgatgggatgacgtttaaatagctaaacggccgagggcaaggatctctcgttgggcttagctaaatggttcaacccaccacg-tccatttaaaa 44160822  T
Q  313 agaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttata 377  Q
    ||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||    
T  44160823 agaatagctcaatcacacatattcatcaactaatttgtacttaacacaatagaccataatttata 44160887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 264 - 421
Target Start/End: Complemental strand, 33361722 - 33361565
Alignment:
Q  264 tctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaata 363  Q
    ||||||| | ||||||||||||||| |||||||||||||||||||||||||||||   |||||||||||||| |||||||||| ||||||||| ||||||    
T  33361722 tctcattagacttagctaaatggtccaacccatcacggtccatttagaaagaataacccaatcatacatatttatcaactaatgagtgcttaatacaata 33361623  T
Q  364 gaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |  |||| | || ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  33361622 ggtcatactataaattataacattaatttataataattgattattgtcaatccataat 33361565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 421
Target Start/End: Complemental strand, 43444942 - 43444831
Alignment:
Q  310 gaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatta 409  Q
    |||||||||||  ||||  |||||||||||||||||| |||| |||||||||||||||||| |||||| ||| | |||| | |||||||||| | ||||     
T  43444942 gaaagaatagtctaatcgcacatattcatcaactaatgagtgtttaacacaatagaccataatttataatataatattaacctataataattgactattg 43444843  T
Q  410 tcaatccataat 421  Q
    ||||||||||||    
T  43444842 tcaatccataat 43444831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 413
Target Start/End: Original strand, 18888167 - 18888257
Alignment:
Q  323 aatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaa 413  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||    
T  18888167 aatcatacatattcatcaactaatgagtgcttaatacaatagaccatattataaattataacattaatttataataattgattattgtcaa 18888257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 13393495 - 13393578
Alignment:
Q  62 agccatagttcaatagatacaagttataacatat---cactaataaagaagggaataagaaattgtgtacctttgaattaggtt 142  Q
    |||||||| ||| || |||||||||| |||||||   || || ||||||| | |||||| ||||||||||||||||||||||||    
T  13393495 agccatagatcactaaatacaagttacaacatataatcaatagtaaagaaagaaataaggaattgtgtacctttgaattaggtt 13393578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 13396634 - 13396717
Alignment:
Q  62 agccatagttcaatagatacaagttataacatat---cactaataaagaagggaataagaaattgtgtacctttgaattaggtt 142  Q
    |||||||| ||| || |||||||||| |||||||   || || ||||||| | |||||| ||||||||||||||||||||||||    
T  13396634 agccatagatcactaaatacaagttacaacatataatcaatagtaaagaaagaaataaggaattgtgtacctttgaattaggtt 13396717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 54256396 - 54256348
Alignment:
Q  209 tttaaccgtctgatggaatgacatttaaatagttaaacgactgagggca 257  Q
    |||||||||||||||| ||||| ||||||||| |||||  |||||||||    
T  54256396 tttaaccgtctgatgggatgacgtttaaatagctaaactgctgagggca 54256348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 6e-75; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 157 - 418
Target Start/End: Complemental strand, 22730023 - 22729762
Alignment:
Q  157 atgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgactgaggg 255  Q
    |||||||||||||  |||||||||||||||||||||| || |||| | | |||||||||| || ||||| ||||| ||||||||| |||||| |||||||    
T  22730023 atgagagggatgattaccctcattccgtttagcaccagaa-tgttcagaatagtttaaccttccgatgggatgacgtttaaatagctaaacggctgaggg 22729925  T
Q  256 caatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgctta 355  Q
    ||  ||| ||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||  | |||| |||||||||||||||||||||||||||    
T  22729924 cagggacctctcattggacttagctaaatggtccaacccatcacagtccatttagaaagaatagcccgatcacacatattcatcaactaattagtgctta 22729825  T
Q  356 acacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccat 418  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||| |||||| |||||||||    
T  22729824 acacaatagatcataatttatattatgacattaacttataataattgattattgtcaatccat 22729762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 226 - 421
Target Start/End: Original strand, 36950150 - 36950345
Alignment:
Q  226 atgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaat 325  Q
    ||||| ||||||||| |||||| |||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  36950150 atgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttataaagaatagctcaat 36950249  T
Q  326 catacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  36950250 cacacatattcatcaactaattagtgcttaacacaataaaccataatttatattatgacattaacttataataattgattattgtcaatccataat 36950345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 152 - 421
Target Start/End: Original strand, 35941063 - 35941324
Alignment:
Q  152 gaagaatgagagggatgac-accctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgact 250  Q
    |||| |||| ||||||||| ||||||||||||||||||| || || |||| | | |||||||||||||||||| |||||| ||||||||| |||||| ||    
T  35941063 gaaggatgatagggatgactaccctcattccgtttagcatcagaa-tgttcagaatagtttaaccgtctgatg-aatgacgtttaaatagctaaacggct 35941160  T
Q  251 gagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagt 350  Q
    |||||||  ||| |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  35941161 gagggcagggacctctcattgggcttagcgaaatggtccaacccatcacagtccatttagaaagaatagtccaatcacacatattcatcaactaattagt 35941260  T
Q  351 gcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    ||||||||||       ||| ||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  35941261 gcttaacaca-------ataatttatattatgacattaacttataataattgattattatcaatctataat 35941324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 208 - 421
Target Start/End: Complemental strand, 43097585 - 43097372
Alignment:
Q  208 gtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatt 307  Q
    ||||||||||||||||| ||||||||||||||| |||||| |||||||||  ||| | ||||||||||||||||||||||| ||| ||||||||| ||||    
T  43097585 gtttaaccgtctgatgggatgacatttaaatagctaaacggctgagggcagggacctttcattgggcttagctaaatggtccaactcatcacggttcatt 43097486  T
Q  308 tagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattat 407  Q
    || |||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||||| | |||| |||||||||||| |||||    
T  43097485 taaaaagaatagtccaatcacacatattcatcaactaactagtgcttaactcaatagaccataatttatattataatattaacttataataattgattat 43097386  T
Q  408 tatcaatccataat 421  Q
    | ||||||||||||    
T  43097385 tgtcaatccataat 43097372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 62 - 401
Target Start/End: Complemental strand, 11340121 - 11339771
Alignment:
Q  62 agccatagttcaatagatacaagttataacatatcac---taataaagaagggaataagaaattgtgtacctttgaattaggttgacgaagga------- 151  Q
    |||||| | ||| |||||||||||||| ||||||||    |||||||||| | |  |||||||||||||| ||| ||||||||||| ||||||           
T  11340121 agccatggatcactagatacaagttatgacatatcatcaataataaagaatgaataaagaaattgtgtacttttaaattaggttgatgaaggataactat 11340022  T
Q  152 --gaagaatgagagggatgacaccctcattccgtttagcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacgac 249  Q
      |||| ||||||||||||||  ||||||||||||||||| || |  |||||  | |||||||||| |||||||  ||||  ||||||||| |||||| |    
T  11340021 aagaaggatgagagggatgactacctcattccgtttagcagcagag-tgtttgcaatagtttaaccttctgatgcgatgatgtttaaatagctaaacggc 11339923  T
Q  250 tgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattag 349  Q
    ||||||||  ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||| ||    
T  11339922 tgagggcagggacctctcattgggtttagctaaatggtccaacccatcacggtccatttagaaagaatagtccaatcacatatattcattaactaatcag 11339823  T
Q  350 tgcttaacacaatagaccatagtttatattatgacattagcttataataatt 401  Q
    ||||||| ||||||||||||| |||||||||| ||||||  |||||||||||    
T  11339822 tgcttaatacaatagaccataatttatattataacattaatttataataatt 11339771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 276 - 421
Target Start/End: Complemental strand, 10491267 - 10491122
Alignment:
Q  276 tagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagttta 375  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||  ||||||  ||||||||| ||||||||||||| ||||||||||||||||| |||     
T  10491267 tagctaaacggtccaacccatcacggtccatttagtaagaatagcccaatcactcatattcattaactaattagtgcctaacacaatagaccataatttg 10491168  T
Q  376 tattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||||| | || | |||||||||||| |||||| || |||||||||    
T  10491167 tattataatataaacttataataattgattattgtcgatccataat 10491122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1634 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold1634
Description:

Target: scaffold1634; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 206 - 421
Target Start/End: Original strand, 26 - 241
Alignment:
Q  206 tagtttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtcca 305  Q
    |||||||| |||||||||| ||||| |||||||||||||||| |||||||||  ||| ||||||| ||||||||||||||||| ||||||||||| ||||    
T  26 tagtttaatcgtctgatgggatgacgtttaaatagttaaacggctgagggcagggacctctcatttggcttagctaaatggtccaacccatcacgatcca 125  T
Q  306 tttagaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttatt 405  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| | || ||||| ||||||  ||||||||||| |||    
T  126 tttagaaagaatagtccaatcatacatattcatcaactaatgagtgcttaatacaatagaccatattataaattataacattaatttataataattgatt 225  T
Q  406 attatcaatccataat 421  Q
    ||| ||||||||||||    
T  226 attgtcaatccataat 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 151 - 421
Target Start/End: Complemental strand, 67974 - 67701
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgttt--agcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacg 247  Q
    ||||| |||||||||||||  ||||||||||||| |  ||||||| ||  ||| | | ||||||||||||||||||| ||||| ||||||||| ||||||    
T  67974 agaaggatgagagggatgagtaccctcattccgtgtgtagcaccagaagagttcagaatagtttaaccgtctgatgggatgacgtttaaatagctaaacg 67875  T
Q  248 actgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaatt 347  Q
     |||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||     
T  67874 gctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaagaatagcccaatcatacatattcatcaactaatg 67775  T
Q  348 agtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||| | || ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  67774 agtgttcaatacaatagaccatattataaattataacattaatttataataattgattattgtcaatccataat 67701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 151 - 421
Target Start/End: Complemental strand, 60498 - 60225
Alignment:
Q  151 agaagaatgagagggatgac-accctcattccgttt--agcaccataaatgtttatagtagtttaaccgtctgatggaatgacatttaaatagttaaacg 247  Q
    ||||| |||||||||||||  ||||||||||||| |  ||||||| ||  ||| | | ||||||||||||||||||| ||||| ||||||||| ||||||    
T  60498 agaaggatgagagggatgagtaccctcattccgtgtgtagcaccagaagagttcagaatagtttaaccgtctgatgggatgacgtttaaatagctaaacg 60399  T
Q  248 actgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccatttagaaagaatagttcaatcatacatattcatcaactaatt 347  Q
     |||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||     
T  60398 gctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagtaagaatagcccaatcatacatattcatcaactaatg 60299  T
Q  348 agtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattattatcaatccataat 421  Q
    |||| | || ||||||||||||| | || ||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  60298 agtgttcaatacaatagaccatattataaattataacattaatttataataattgattattgtcaatccataat 60225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 210 - 421
Target Start/End: Complemental strand, 30220 - 30009
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattta 309  Q
    ||||||||||||||||||||| ||||||||| |||||| |||| || |  ||| ||||||||| ||||||||||||||  || |||||||||||||||||    
T  30220 ttaaccgtctgatggaatgacgtttaaatagctaaacggctgaaggtagagacctctcattggacttagctaaatggttcaatccatcacggtccattta 30121  T
Q  310 gaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatta 409  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||||| ||| | |||| |||||||||||| ||||||     
T  30120 gaaagaatagctcaatcacacatattcatcaactaattagtgtttaacacaatagatcataatttataatataatattaacttataataattgattattg 30021  T
Q  410 tcaatccataat 421  Q
    ||||||||||||    
T  30020 tcaatccataat 30009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 210 - 421
Target Start/End: Original strand, 40145 - 40356
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattta 309  Q
    ||||||||||||||| |||||  |||||||| | |||| |||||||||||||| |||||| |||||||||||||||||| ||| || |||||||||||||    
T  40145 ttaaccgtctgatgggatgacggttaaatagcttaacggctgagggcaatgacctctcatcgggcttagctaaatggtccaactcagcacggtccattta 40244  T
Q  310 gaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatta 409  Q
     ||||||||  ||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||| ||| | |||| |||||||||||| ||||||     
T  40245 aaaagaataactcaatcacacatattcatcaactaattagtgcttagcacagtagaccataatttataatataatattaacttataataattgattattg 40344  T
Q  410 tcaatccataat 421  Q
    ||||||||||||    
T  40345 tcaatccataat 40356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 210 - 421
Target Start/End: Original strand, 134550 - 134761
Alignment:
Q  210 ttaaccgtctgatggaatgacatttaaatagttaaacgactgagggcaatgacatctcattgggcttagctaaatggtctaacccatcacggtccattta 309  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||  |  ||| |||||||||||||| |||||||||  ||||||||||||||||||||    
T  134550 ttaaccgtctgatggaatgacgtttaaatagctaaacgactgaggctagggacctctcattgggcttatctaaatggttcaacccatcacggtccattta 134649  T
Q  310 gaaagaatagttcaatcatacatattcatcaactaattagtgcttaacacaatagaccatagtttatattatgacattagcttataataatttattatta 409  Q
    | || |||||| ||||||  | ||||||||||||||| |||| |||||| |||| |||||| |||||||||| | |||| |||||||||| |||||||||    
T  134650 gtaacaatagtccaatcactcgtattcatcaactaatcagtgtttaacagaatataccataatttatattataagattaacttataataaattattatta 134749  T
Q  410 tcaatccataat 421  Q
    ||||||||||||    
T  134750 tcaatccataat 134761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1074 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1074
Description:

Target: scaffold1074; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 169 - 97
Alignment:
Q  58 attcagccatagttcaatagatacaagttataacatatcactaataaagaagggaataagaaattgtgtacctt 131  Q
    |||||||||||  ||| |||||||||| |||||||||  | |||||||||| |||| ||||| |||||||||||    
T  169 attcagccataaatcagtagatacaaggtataacatagaagtaataaagaa-ggaagaagaatttgtgtacctt 97  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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